SOFT : kSNP4
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Site du soft: https://sourceforge.net/projects/ksnp/
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LICENSE:
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BSD Open Source

See software documentation for more informations.

Location: /usr/local/bioinfo/src/kSNP4
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Load binaries and environment:
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-> Version v4.1

#Need Python
module load devel/python/Python-3.11.1

module load bioinfo/kSNP4/4.1

Warning! By default all cpus are used on the node. Don't forget to adjust  -CPU kSNP4 commands and --cpus-per-task option for Slurm.

Bug non résolu avec certains binaires: https://sourceforge.net/p/ksnp/discussion/general/thread/6672402ff4/
mais aucune procédure et code source pour re-compiler...

Example directory for use on cluster:
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/usr/local/bioinfo/src/kSNP4/example_on_cluster

To submit: sbatch test_kSNP4.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.