SOFT : mgatk
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Site du soft: https://github.com/caleblareau/mgatk
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/mgatk
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Load binaries and environment:
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-> Version v0.7.0

# Need R
module load statistics/R/4.2.2

module load bioinfo/mgatk/0.7.0

Warning! By default all cpus are used on the node. Don't forget to adjust --ncores  option of mgatk and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/mgatk/example_on_cluster

To submit: sbatch test_mgatk-v0.7.0.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.