SOFT : miRDeep2
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Site du soft: https://www.mdc-berlin.de/n-rajewsky#t-data,software&resources
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LICENSE:
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GPL-v3.0

See software documentation for more informations.

Location: /usr/local/bioinfo/src/miRDeep2
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Load binaries and environment:
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-> Version v2.0.0.5 for dicot_specific_miRDeep2

#Need python2 bowtie,fastx-toolkit,randfold,VienneRNA-1.8.5 :
module load devel/python/Python-2.7.18 bioinfo/bowtie/1.2.1.1 bioinfo/FASTX-Toolkit/0.0.14 bioinfo/randfold/2.0.1 bioinfo/ViennaRNA/1.8.5

module load bioinfo/miRDeep2/dicot_specific_miRDeep2

-> Version 2.0.1.3

# if not already loaded
module load devel/Miniconda/Miniconda3-init
# the module itself (contains mideep2 and its requirements randfold and viennarna)
module load bioinfo/miRDeep2/2.0.1.3

# and to unload it:
module unload bioinfo/miRDeep2/2.0.1.3
# if you don't need anymore Miniconda
module unload devel/Miniconda/Miniconda3-init

Example directory for use on cluster:
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you can addapt /usr/local/bioinfo/src/miRDeep2/example_on_cluster to load the right module version 2.0.1.3


-> Version 2.0.0.8

# if not already loaded
module load devel/Miniconda/Miniconda3-init
# the module itself (contains mideep2 and its requirements randfold and viennarna)
module load bioinfo/miRDeep2/2.0.0.8

# and to unload it:
module unload bioinfo/miRDeep2/2.0.0.8
# if you don't need anymore Miniconda
module unload devel/Miniconda/Miniconda3-init

Example directory for use on cluster:
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/usr/local/bioinfo/src/miRDeep2/example_on_cluster

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.