SOFT : phyloFlash
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Site du soft: http://hrgv.github.io/phyloFlash/
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/phyloFlash
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Load binaries and environment:
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-> Version v3.4.2 (BUG with Spades. Load module bioinfo/SPAdes/3.15.5_compil after module bioinfo/phyloFlash/3.4.2)

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/phyloFlash/3.4.2
module load bioinfo/SPAdes/3.15.5_compil

To unload module, unload  in order:

module unload bioinfo/phyloFlash/3.4.2
module unload devel/Miniconda/Miniconda3

Default dbhome: -dbhome /usr/local/bioinfo/src/phyloFlash/phyloFlash-v3.4.2/database/138.1

Warning! By default all cpu are used by  phyloFlash on the node. Don't forget to adjust -CPUs  and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/phyloFlash/example_on_cluster

To submit: sbatch test_phyloFlash-v3.4.2.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.