SOFT : regenie
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Site du soft: https://rgcgithub.github.io/regenie/
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/regenie
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Load binaries and environment:
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-> Version v4.1

#Need gcc-12.2.0
module load compilers/gcc/12.2.0

module load bioinfo/regenie/4.1

Warning! By default all cpus are used on the node. Don't forget to adjust --threads option of regenie and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/regenie/example_on_cluster

To submit: sbatch test_regenie-v4.1.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.