SOFT : smudgeplot
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Site du soft: https://github.com/KamilSJaron/smudgeplot
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LICENSE:
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Apache 2.0

See software documentation for more informations.

Location: /usr/local/bioinfo/src/smudgeplot
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Load binaries and environment:
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-> Version 0.2.5

#Need Miniconda3
module load devel/Miniconda/Miniconda3 

module load bioinfo/smudgeplot/0.2.5

To unload module, unload  in order:

module load bioinfo/smudgeplot/0.2.5
module unload devel/Miniconda/Miniconda3

-> Version v0.4.0 (include FASTK, tbenavi1/KMC with smudge_pairs)

#Need Miniforge
module load devel/Miniforge/Miniforge3
#Need gcc -12.2.0 for KMC
module load compilers/gcc/12.2.0

module load bioinfo/smudgeplot/0.4.0

To unload module, unload  in order:

module unload bioinfo/smudgeplot/0.4.0
module unload compilers/gcc/12.2.0
module unload devel/Miniforge/Miniforge3

-> Version v0.5.3 (include FASTK, tbenavi1/KMC with smudge_pairs)

#Need Miniforge
module load devel/Miniforge/Miniforge3
#Need gcc -12.2.0 for KMC
module load compilers/gcc/12.2.0

module load bioinfo/smudgeplot/0.5.3

To unload module, unload  in order:

module unload bioinfo/smudgeplot/0.5.3
module unload compilers/gcc/12.2.0
module unload devel/Miniforge/Miniforge3


Example directory for use on cluster:
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/usr/local/bioinfo/src/smudgeplot/example_on_cluster

To submit: sbatch test_smudgeplot.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.