SOFT : transposon_annotation_tools
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Site du soft: https://github.com/DerKevinRiehl/transposon_annotation_tools
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LICENSE:
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GPL-3.0 license

See software documentation for more informations.

Location: /usr/local/bioinfo/src/transposon_annotation_tools
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Load binaries and environment:
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-> Version a69db72

module load bioinfo/transposon_annotation_tools/a69db72

Example directory for use on cluster:
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/usr/local/bioinfo/src/transposon_annotation_tools/example_on_cluster

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.

This software is installed through a container solution with the following command wrappers (available in PATH):
mustv2 helitronscanner sine_finder mitetracker miteFinderII sinescan gt RepeatModeler BuildDatabase RepeatMasker transposonPSI proteinNCBICDD1000

Your current directory, your save, work, the /work/project and all those listed in environment variable SINGULARITY_BINDPATH (comma separated list of folder paths without any space) will be accessible by the container.
If you need to access somewhere else, modify the SINGULARITY_BINDPATH:
export SINGULARITY_BINDPATH=/my/path1,/his/path2,/her/path3,$SINGULARITY_BINDPATH