SOFT : trinityrnaseq
------
Site du soft: https://github.com/trinityrnaseq/trinityrnaseq
-------------

LICENSE:
--------

Free, see https://github.com/trinityrnaseq/trinityrnaseq/blob/master/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/trinityrnaseq
---------

Load binaries and environment:
------------------------------

-> Version v2.8.5

#If need bowtie2, jellyfish, salmon, python
module load bioinfo/bowtie/2.5.1 bioinfo/samtools/1.14 bioinfo/Jellyfish/2.3.0 bioinfo/Salmon/1.10.0 devel/python/Python-3.11.1

module load bioinfo/trinityrnaseq-v2.8.5

-> Version v2.15.1

#Need bowtie2, samtools, jellyfuish, salmon, python 
module load bioinfo/bowtie/2.5.1 bioinfo/samtools/1.14 bioinfo/Jellyfish/2.3.0 bioinfo/Salmon/1.10.0 devel/python/Python-3.11.1

module load bioinfo/trinityrnaseq/2.15.1

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/trinityrnaseq/example_on_cluster

To submit: sbatch test_trinityrnaseq-v2.15.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.