SOFT : velocyto
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Site du soft: http://velocyto.org/velocyto.py/install/index.html#install
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/velocyto
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Load binaries and environment:
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-> Version v0.17

module load devel/Miniconda/Miniconda3-init
conda activate velocyto-v0.17_env

Unload environment:
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# exit from velocyto conda environment
conda deactivate
# exit from base conda environment
conda deactivate
# unload Miniconda3 software module
module unload devel/Miniconda/Miniconda3-init

WARNING:
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Because velocyto is distributed as a conda environment, since its activation the python is THE ONE of velocyto, i.e. 3.6.5.
Be aware that since velocyto environment activation, python scripts using default python binary will use the one above.
Thus it's important to unload completely this environment if you want to use other programs after velocyto.
Even after the first command above "conda deactivate", Miniconda3 module is still loaded and base conda environment activated, 
and this time the python is Miniconda3 one, i.e. 3.10.10.
While velocyto conda environment is active, the PATH is prepended, and some velocyto required software installed can mask your own software.
Finaly, module unload doesn't restore completely the SHELL environment as it was before:
  some conda functions will still be defined as well as some CONDA environment variables.

or


module load devel/Miniconda/Miniconda3
module load bioinfo/velocyto/0.17

To unload module, unload  in order:

module unload bioinfo/velocyto/0.17
module unload devel/Miniconda/Miniconda3

Example directory for use on cluster:
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/usr/local/bioinfo/src/velocyto/example_on_cluster

To submit: sbatch test_velocity-v0.17.sh (No data sample found, so just help option)


See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.