----------- rpoB_122017  -----------

rpoB database is provided by DGiMi laboratory from INRA Montpellier : (https://www6.montpellier.inra.fr/dgimi)
For more details and citation, please refer to : https://doi.org/10.1186/s12866-019-1546-z

Please contact Jean-Claude Ogier (Jean-Claude.Ogier@umontpellier.fr) for any questions



----------- rpoB_bacteria_NCBI_refseq_all_lvl_assembly_20240707  -----------

This database contains 363 604 rpob sequences found in 361 617 genomes.

Implementation:

## 1. Download genomes with genome_updater
### Install Genome_update
Documentation:
https://github.com/pirovc/genome_updater
https://ftp.ncbi.nlm.nih.gov/genomes/all/README.txt
https://ftp.ncbi.nlm.nih.gov/genomes/README_assembly_summary.txt

### Download

Download genomes at all assembly levels in refseq: complete genome, chromosome, scaffold and contig.

download date: 2024/07/04
Use fetch FecthMGS to obtain the rpob sequences contained in these genomes.



contact: gabryelle.agoutin@inrae.fr




----------- rpoB_bacteria_NCBI_refseq_genome_complete_and_chromosome_20240707  -----------

This database contains 47069 rpoB sequences found in 46714 genomes.

Implementation:

## 1. Download genomes with genome_updater
### Install Genome_update
Documentation:
https://github.com/pirovc/genome_updater
https://ftp.ncbi.nlm.nih.gov/genomes/all/README.txt
https://ftp.ncbi.nlm.nih.gov/genomes/README_assembly_summary.txt

### Download

Download genomes assembly levels in refseq: complete genome, chromosome.
download date: 2024/07/07
Use fetch FecthMGS to obtain the rpob sequences contained in these genomes.



contact: gabryelle.agoutin@inrae.fr