Summary

Pan1c_View | Introduction

This report presents the results of Pan1c.

Download Pan1c output files

General information

Project

Reference

Pan1c version

Pan1c repository

Apptainer images

Pan1c parameters

Pan1c tools

Assemblies

Assemblathon metrics | Scaffolds

Assemblathon metrics | Contigs

Chromosome length

Select a metric: a colouration type: and a colouration opacity:

Contig position

Select a chromosome:

SyRI on chromosome

Select a chromosome:

SyRI on haplotype

Select an assembly:

Graph

General metrics

Path composition by groups | Stacked bar

Select a chromosome: and a stack type:

Auto select chromosome:

Shared content | Heatmap

Select a tool: a chromosome: and a metric:

Auto select:

Shared content | Heatmap

Select a tool: a chromosome: and a metric:

Distance between chromosomes | Heatmap

Select a tool:

Distance between chromosomes | Heatmap

Select a tool:

Odgi figures

Select a tool: and a chromosome:

Auto select chromosome:

Odgi figures

Select a tool: and a chromosome:

Variants: Insertions / Deletions

General statistics

Select at least one tool: at least one assembly: at least one chromosome: select a stack type: and choose an alignment:

Insertion / Deletion length distribution

Select at least one tool: at least one assembly: and at least one chromosome: and select linear or log scale:

Error

Error message

Summary

Pan1c_View | Introduction

Download Pan1c output files

General information

Apptainer images

Pan1c parameters

Pan1c tools

Assemblies

Assemblathon metrics | Scaffolds

Assemblathon metrics | Contigs

Chromosome length

Contig position

SyRI on chromosome

SyRI on haplotype

Graph

General metrics

Path composition by groups | Stacked bar

Shared content | Heatmap

Shared content | Heatmap

Distance between chromosomes | Heatmap

Distance between chromosomes | Heatmap

Odgi figures

Odgi figures

Variants: Insertions / Deletions

General statistics

Warning:

Insertion / Deletion length distribution

Warning:

Documentation

Summary pane

Assemblies pane

Imported documentation