Index of /~formation/16_SGS-SNP/Corrections/CmdLine/Results

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]0_fastqc.jobs2023-11-07 11:02 120  
[ ]1_bwamem.jobs2023-11-07 11:03 428  
[ ]2_index.jobs2023-11-07 11:04 60  
[ ]3_flagstat.jobs2023-11-07 11:05 118  
[ ]4_md.jobs2023-11-07 11:08 410  
[ ]5_recal1.jobs2023-11-07 11:09 484  
[ ]6_recal2.jobs2023-11-07 11:12 402  
[ ]7_HaplotypeCaller.jobs2023-11-07 11:13 364  
[ ]8_CombineGVCFs.jobs2023-11-07 11:48 186  
[ ]9_GenotypeGVCFs.jobs2023-11-07 11:49 131  
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.dict2023-11-07 11:09 335  
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa2021-10-21 11:30 8.0M 
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa.amb2023-11-07 11:03 597  
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa.ann2023-11-07 11:03 181  
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa.bwt2023-11-07 11:03 7.8M 
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa.fai2023-11-07 11:09 45  
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa.pac2023-11-07 11:03 2.0M 
[ ]Gallus_gallus.Gallus_gallus-5.0.dna.toplevel_chr25-26.fa.sa2023-11-07 11:03 3.9M 
[TXT]Gallus_gallus_incl_consequences_chr25-26.vcf2022-11-08 16:27 54M 
[ ]Gallus_gallus_incl_consequences_chr25-26.vcf.gz2022-11-15 16:12 3.4M 
[TXT]Gallus_gallus_incl_consequences_chr25-26.vcf.idx2021-10-21 11:56 32K 
[TXT]Gallus_gallus_incl_consequences_chr25-26.vcf.sidx2023-11-07 11:55 98K 
[DIR]LOGS/2023-11-07 11:49 -  
[ ]SRR-snpEff-annotate.vcf.gz2023-11-07 11:55 7.0M 
[ ]SRR-snpEff-annotate.vcf.gz.tbi2023-11-07 11:55 4.8K 
[ ]SRR-snpEff.vcf.gz2023-11-07 11:54 5.8M 
[ ]SRR-snpEff.vcf.gz.tbi2023-11-07 11:54 4.8K 
[TXT]SRR-snpEff_summary.genes.txt2023-11-07 11:54 106K 
[TXT]SRR-snpEff_summary.html2023-11-07 11:54 345K 
[TXT]SRR.g.vcf2023-11-07 11:49 310M 
[TXT]SRR.g.vcf.idx2023-11-07 11:49 822K 
[ ]SRR.vcf.gz2023-11-07 11:50 5.5M 
[ ]SRR.vcf.gz.tbi2023-11-07 11:50 4.5K 
[ ]SRR7062654.bam2023-11-07 11:03 147M 
[ ]SRR7062654.bam.bai2023-11-07 11:04 23K 
[ ]SRR7062654.bam.flagstat2023-11-07 11:05 513  
[ ]SRR7062654.bam.metrics2023-11-07 11:08 3.6K 
[ ]SRR7062654.bam.stat2023-11-07 11:13 74K 
[ ]SRR7062654.bam.stat-acgt-cycles.gp2023-11-07 11:13 3.8K 
[IMG]SRR7062654.bam.stat-acgt-cycles.png2023-11-07 11:13 17K 
[ ]SRR7062654.bam.stat-coverage.gp2023-11-07 11:13 1.8K 
[IMG]SRR7062654.bam.stat-coverage.png2023-11-07 11:13 17K 
[ ]SRR7062654.bam.stat-gc-content.gp2023-11-07 11:13 2.4K 
[IMG]SRR7062654.bam.stat-gc-content.png2023-11-07 11:13 26K 
[ ]SRR7062654.bam.stat-gc-depth.gp2023-11-07 11:13 2.4K 
[IMG]SRR7062654.bam.stat-gc-depth.png2023-11-07 11:13 33K 
[ ]SRR7062654.bam.stat-indel-cycles.gp2023-11-07 11:13 3.0K 
[IMG]SRR7062654.bam.stat-indel-cycles.png2023-11-07 11:13 46K 
[ ]SRR7062654.bam.stat-indel-dist.gp2023-11-07 11:13 1.5K 
[IMG]SRR7062654.bam.stat-indel-dist.png2023-11-07 11:13 33K 
[ ]SRR7062654.bam.stat-insert-size.gp2023-11-07 11:13 13K 
[IMG]SRR7062654.bam.stat-insert-size.png2023-11-07 11:13 22K 
[ ]SRR7062654.bam.stat-quals-hm.gp2023-11-07 11:13 37K 
[IMG]SRR7062654.bam.stat-quals-hm.png2023-11-07 11:13 27K 
[ ]SRR7062654.bam.stat-quals.gp2023-11-07 11:13 2.0K 
[IMG]SRR7062654.bam.stat-quals.png2023-11-07 11:13 19K 
[ ]SRR7062654.bam.stat-quals2.gp2023-11-07 11:13 5.3K 
[IMG]SRR7062654.bam.stat-quals2.png2023-11-07 11:13 24K 
[ ]SRR7062654.bam.stat-quals3.gp2023-11-07 11:13 78K 
[IMG]SRR7062654.bam.stat-quals3.png2023-11-07 11:13 89K 
[TXT]SRR7062654.bam.stat.html2023-11-07 11:13 4.9K 
[TXT]SRR7062654.md.bai2023-11-07 11:08 23K 
[ ]SRR7062654.md.bam2023-11-07 11:08 204M 
[TXT]SRR7062654.md.recal.bai2023-11-07 11:13 23K 
[ ]SRR7062654.md.recal.bam2023-11-07 11:13 189M 
[ ]SRR7062654.md.recal.bam.stat2023-11-07 11:13 69K 
[ ]SRR7062654.md.recal.bam.stat-acgt-cycles.gp2023-11-07 11:13 3.8K 
[IMG]SRR7062654.md.recal.bam.stat-acgt-cycles.png2023-11-07 11:13 17K 
[ ]SRR7062654.md.recal.bam.stat-coverage.gp2023-11-07 11:13 1.8K 
[IMG]SRR7062654.md.recal.bam.stat-coverage.png2023-11-07 11:13 18K 
[ ]SRR7062654.md.recal.bam.stat-gc-content.gp2023-11-07 11:13 2.4K 
[IMG]SRR7062654.md.recal.bam.stat-gc-content.png2023-11-07 11:13 27K 
[ ]SRR7062654.md.recal.bam.stat-gc-depth.gp2023-11-07 11:13 2.4K 
[IMG]SRR7062654.md.recal.bam.stat-gc-depth.png2023-11-07 11:13 34K 
[ ]SRR7062654.md.recal.bam.stat-indel-cycles.gp2023-11-07 11:13 3.0K 
[IMG]SRR7062654.md.recal.bam.stat-indel-cycles.png2023-11-07 11:13 47K 
[ ]SRR7062654.md.recal.bam.stat-indel-dist.gp2023-11-07 11:13 1.5K 
[IMG]SRR7062654.md.recal.bam.stat-indel-dist.png2023-11-07 11:13 34K 
[ ]SRR7062654.md.recal.bam.stat-insert-size.gp2023-11-07 11:13 13K 
[IMG]SRR7062654.md.recal.bam.stat-insert-size.png2023-11-07 11:13 22K 
[ ]SRR7062654.md.recal.bam.stat-quals-hm.gp2023-11-07 11:13 32K 
[IMG]SRR7062654.md.recal.bam.stat-quals-hm.png2023-11-07 11:13 32K 
[ ]SRR7062654.md.recal.bam.stat-quals.gp2023-11-07 11:13 2.0K 
[IMG]SRR7062654.md.recal.bam.stat-quals.png2023-11-07 11:13 20K 
[ ]SRR7062654.md.recal.bam.stat-quals2.gp2023-11-07 11:13 5.3K 
[IMG]SRR7062654.md.recal.bam.stat-quals2.png2023-11-07 11:13 25K 
[ ]SRR7062654.md.recal.bam.stat-quals3.gp2023-11-07 11:13 67K 
[IMG]SRR7062654.md.recal.bam.stat-quals3.png2023-11-07 11:13 88K 
[TXT]SRR7062654.md.recal.bam.stat.html2023-11-07 11:13 5.2K 
[TXT]SRR7062654.md.recal.g.vcf2023-11-07 11:27 150M 
[TXT]SRR7062654.md.recal.g.vcf.idx2023-11-07 11:27 478K 
[TXT]SRR7062654.md.recal.table2023-11-07 11:11 749K 
[ ]SRR7062654_R1.fastq.gz2021-10-25 14:29 86M 
[TXT]SRR7062654_R1_fastqc.html2023-11-07 11:03 210K 
[ ]SRR7062654_R1_fastqc.zip2023-11-07 11:03 231K 
[ ]SRR7062654_R2.fastq.gz2021-10-25 14:29 88M 
[TXT]SRR7062654_R2_fastqc.html2023-11-07 11:03 208K 
[ ]SRR7062654_R2_fastqc.zip2023-11-07 11:03 232K 
[ ]SRR7062655.bam2023-11-07 11:03 143M 
[ ]SRR7062655.bam.bai2023-11-07 11:04 23K 
[ ]SRR7062655.bam.flagstat2023-11-07 11:05 513  
[ ]SRR7062655.bam.metrics2023-11-07 11:09 3.6K 
[TXT]SRR7062655.md.bai2023-11-07 11:09 23K 
[ ]SRR7062655.md.bam2023-11-07 11:09 199M 
[TXT]SRR7062655.md.recal.bai2023-11-07 11:13 23K 
[ ]SRR7062655.md.recal.bam2023-11-07 11:13 184M 
[TXT]SRR7062655.md.recal.g.vcf2023-11-07 11:30 155M 
[TXT]SRR7062655.md.recal.g.vcf.idx2023-11-07 11:30 491K 
[TXT]SRR7062655.md.recal.table2023-11-07 11:10 750K 
[ ]SRR7062655_R1.fastq.gz2021-10-25 14:29 83M 
[TXT]SRR7062655_R1_fastqc.html2023-11-07 11:03 208K 
[ ]SRR7062655_R1_fastqc.zip2023-11-07 11:03 229K 
[ ]SRR7062655_R2.fastq.gz2021-10-25 14:29 86M 
[TXT]SRR7062655_R2_fastqc.html2023-11-07 11:03 211K 
[ ]SRR7062655_R2_fastqc.zip2023-11-07 11:03 236K