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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| sub_matrix.R | 2018-09-28 14:04 | 4.5K | |
| split_fasta.pl | 2018-09-28 14:04 | 3.5K | |
| sample_medioids.R | 2018-09-28 14:04 | 8.2K | |
| run_panoct.pl | 2018-10-03 10:57 | 48K | |
| run_pangenome.pl | 2018-10-01 17:35 | 47K | |
| rgi/ | 2018-09-28 14:04 | - | |
| plot_pangenome.R | 2018-09-28 14:04 | 17K | |
| parse_genbank_files.pl | 2018-09-28 14:04 | 24K | |
| paralog_matchtable.pl | 2018-09-28 14:04 | 7.1K | |
| panoct_multifasta.pl | 2018-09-28 14:04 | 8.7K | |
| panoct.pl | 2018-09-28 14:04 | 173K | |
| pangenome_statistics.pl | 2018-10-03 12:11 | 34K | |
| pan_chromosome/ | 2018-09-28 14:04 | - | |
| new_plot_pangenome.R | 2018-10-03 12:55 | 16K | |
| neighbor_joining_tree_batch | 2018-09-28 14:04 | 17 | |
| muscle | 2018-09-28 14:04 | 1.2M | |
| matchtable2panoct.result.pl | 2018-10-03 11:31 | 1.7K | |
| map_go_via_blast.pl | 2018-09-28 14:04 | 12K | |
| map_annotation_to_fgis.pl | 2018-09-28 14:04 | 6.8K | |
| make_trees.R | 2018-09-28 14:04 | 2.8K | |
| make_BSR_trees.sh | 2018-09-28 14:04 | 4.5K | |
| kmer_matrix_maker.pl | 2018-09-28 14:04 | 6.4K | |
| hclust_complete_newick.R | 2018-09-28 14:04 | 3.5K | |
| get_patric_files.pl | 2018-09-28 14:04 | 4.2K | |
| get_go_annotations.pl | 2018-10-01 17:59 | 21K | |
| get_dna_for_loci.pl | 2018-09-28 14:04 | 6.1K | |
| get_collection_date.pl | 2018-09-28 14:04 | 5.5K | |
| genome_properties/ | 2018-09-28 14:04 | - | |
| gene_order.pl | 2018-09-28 14:04 | 80K | |
| ftp_download_ncbi_annotation.pl | 2018-09-28 14:04 | 38K | |
| download_ncbi_annotation.pl | 2018-09-28 14:04 | 9.2K | |
| create_mev_table.pl | 2018-09-28 14:04 | 5.7K | |
| create_meta_groupings.pl | 2018-09-28 14:04 | 34K | |
| core_neighbor_finder.pl | 2018-09-28 14:04 | 13K | |
| core_hmm_checker_prep.pl | 2018-09-28 14:04 | 3.4K | |
| core_hmm_checker_post.pl | 2018-09-28 14:04 | 3.6K | |
| core_hmm_checker.pl | 2018-09-28 14:04 | 4.9K | |
| core_cluster_histogram.R | 2018-10-03 11:57 | 3.4K | |
| core.HMM | 2018-09-28 14:04 | 15M | |
| convert_att_file_to_hsh.pl | 2018-09-28 14:04 | 3.8K | |
| compute_pangenome.R | 2018-09-28 14:04 | 9.9K | |
| cluster_size.pl | 2018-09-28 14:04 | 8.8K | |
| cluster_genomes.R | 2018-09-28 14:04 | 7.0K | |
| cluster_consensus_synteny.pl | 2018-09-28 14:04 | 23K | |
| cluster_consensus.pl | 2018-09-28 14:04 | 16K | |
| cluster_alt_genomes.R | 2018-09-28 14:04 | 5.7K | |
| clean_multifasta.pl | 2018-09-28 14:04 | 4.5K | |
| choose_centroids.pl | 2018-09-28 14:04 | 8.2K | |
| check_combined_files.pl | 2018-09-28 14:04 | 5.4K | |
| check_att_files.pl | 2018-09-28 14:04 | 10K | |
| centroid_blast_search.pl | 2018-09-28 14:04 | 2.8K | |
| analysis/ | 2018-09-28 14:04 | - | |
| align_clusters.pl | 2018-09-28 14:04 | 10K | |
| UPGMA_tree_batch | 2018-09-28 14:04 | 19 | |
| Newick-ruby/ | 2018-09-28 14:04 | - | |
| HMMER2GO/ | 2018-09-28 14:02 | - | |
| BLAST2GO/ | 2018-09-28 14:02 | - | |