Discrepancy Report Results

Summary
DISC_SOURCE_QUALS_ASNDISC:strain (all present, all unique)
DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all unique)
DISC_FEATURE_COUNT:gene: 831 present
DISC_FEATURE_COUNT:CDS: 793 present
DISC_FEATURE_COUNT:tRNA: 34 present
DISC_FEATURE_COUNT:rRNA: 3 present
DISC_FEATURE_COUNT:tmRNA: 1 present
DISC_COUNT_NUCLEOTIDES:1 nucleotide Bioseqs are present
OVERLAPPING_GENES:163 genes overlap another gene on the same strand.
OVERLAPPING_CDS:7 coding regions overlap another coding region with a similar or identical name.
RNA_CDS_OVERLAP:2 coding regions overlap RNA features
SUSPECT_PRODUCT_NAMES:2 product_names contain suspect phrase or characters
	May contain database identifier more appropriate in note; remove from product name
		2 features Contains underscore
DISC_SUSPICIOUS_NOTE_TEXT:6 note texts contain suspicious phrases
DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
FATAL: DISC_SUSPECT_RRNA_PRODUCTS:1 rRNA product names contain suspect phrase
ONCALLER_COMMENT_PRESENT:1 comment descriptors were found (all same)
SHORT_PROT_SEQUENCES:72 protein sequences are shorter than 50 aa.
MISSING_GENOMEASSEMBLY_COMMENTS:1 bioseqs are missing GenomeAssembly structured comments
FIND_OVERLAPPED_GENES:1 genes completely overlapped by other genes
MOLTYPE_NOT_MRNA:1 molecule types are not set as mRNA.
TECHNIQUE_NOT_TSA:1 technique are not set as TSA
MISSING_STRUCTURED_COMMENT:1 sequences do not include structured comments.
MISSING_PROJECT:794 sequences do not include project.
FATAL: RRNA_NAME_CONFLICTS:1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA"
DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)


Detailed Report

DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all unique)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for strain
DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all unique)
DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::1 sources have unique values for taxname
DiscRep_ALL:DISC_FEATURE_COUNT::gene: 831 present
DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 793 present
DiscRep_ALL:DISC_FEATURE_COUNT::tRNA: 34 present
DiscRep_ALL:DISC_FEATURE_COUNT::rRNA: 3 present
DiscRep_ALL:DISC_FEATURE_COUNT::tmRNA: 1 present
DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::1 nucleotide Bioseqs are present
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)

DiscRep_ALL:OVERLAPPING_GENES::163 genes overlap another gene on the same strand.
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ssrA	wCam_contig000001:645-974	wCam_00001
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00002	wCam_contig000001:782-883	wCam_00002
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00003	wCam_contig000001:972-1409	wCam_00003
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplS	wCam_contig000001:c6621-6247	wCam_00007
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	trmD	wCam_contig000001:c7312-6605	wCam_00008
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00024	wCam_contig000001:c21954-21469	wCam_00024
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00025	wCam_contig000001:c22184-21921	wCam_00025
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00032	wCam_contig000001:c31386-30073	wCam_00032
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00033	wCam_contig000001:c32713-31373	wCam_00033
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	lspA	wCam_contig000001:c33230-32766	wCam_00034
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ribF_1	wCam_contig000001:c33700-33227	wCam_00035
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00046	wCam_contig000001:c48593-47823	wCam_00046
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	psd	wCam_contig000001:c49282-48590	wCam_00047
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00054	wCam_contig000001:c63910-63005	wCam_00054
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00055	wCam_contig000001:c64634-63903	wCam_00055
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	acpP	wCam_contig000001:64786-65058	wCam_00056
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	fabF	wCam_contig000001:65055-66320	wCam_00057
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	engB	wCam_contig000001:103962-104543	wCam_00082
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	argB	wCam_contig000001:104518-105456	wCam_00083
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	dut	wCam_contig000001:105526-105990	wCam_00084
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00085	wCam_contig000001:105959-106096	wCam_00085
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00091	wCam_contig000001:c114392-113613	wCam_00091
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pgpA	wCam_contig000001:c114864-114382	wCam_00092
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	efp	wCam_contig000001:121702-122268	wCam_00098
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	suhB	wCam_contig000001:122237-122974	wCam_00099
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	gph	wCam_contig000001:129592-130248	wCam_00104
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00105	wCam_contig000001:130248-130742	wCam_00105
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	mnmA	wCam_contig000001:138982-140094	wCam_00112
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00113	wCam_contig000001:140051-140224	wCam_00113
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rnhA	wCam_contig000001:144084-144521	wCam_00117
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00118	wCam_contig000001:144514-147564	wCam_00118
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	tatC	wCam_contig000001:c148458-147691	wCam_00119
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	gapB	wCam_contig000001:c149441-148455	wCam_00120
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	xthA	wCam_contig000001:c208743-207964	wCam_00159
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00160	wCam_contig000001:c209456-208743	wCam_00160
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00172	wCam_contig000001:c223209-222991	wCam_00172
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00173	wCam_contig000001:c223460-223197	wCam_00173
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00174	wCam_contig000001:c223702-223457	wCam_00174
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	znuC	wCam_contig000001:225445-226185	wCam_00177
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ubiB	wCam_contig000001:226182-227612	wCam_00178
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	hemC	wCam_contig000001:231197-232075	wCam_00181
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	murB	wCam_contig000001:232066-232953	wCam_00182
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ispG	wCam_contig000001:236067-236165	wCam_00186
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00187	wCam_contig000001:236134-236301	wCam_00187
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	petB	wCam_contig000001:248263-249495	wCam_00197
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	petC	wCam_contig000001:249495-250259	wCam_00198
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	dhfR	wCam_contig000001:c253562-253083	wCam_00201
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	folP1	wCam_contig000001:c254857-253559	wCam_00202
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	folB	wCam_contig000001:c255261-254857	wCam_00203
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pleD_2	wCam_contig000001:c261261-260854	wCam_00208
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00209	wCam_contig000001:c261532-261233	wCam_00209
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	lipA	wCam_contig000001:c269934-269062	wCam_00212
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpmB	wCam_contig000001:c270271-269927	wCam_00213
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	yidC	wCam_contig000001:282309-284027	wCam_00223
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ribH1	wCam_contig000001:284008-284196	wCam_00224
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ribH	wCam_contig000001:284283-284435	wCam_00225
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00226	wCam_contig000001:284435-284917	wCam_00226
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	infA	wCam_contig000001:285032-285295	wCam_00227
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	yhdE	wCam_contig000001:285273-285869	wCam_00228
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00232	wCam_contig000001:c292596-291604	wCam_00232
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00233	wCam_contig000001:c294086-292593	wCam_00233
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	virB9_1	wCam_contig000001:c294903-294103	wCam_00234
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ptlE	wCam_contig000001:c295579-294896	wCam_00235
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nfuA	wCam_contig000001:309210-309794	wCam_00243
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	hisS	wCam_contig000001:309791-311032	wCam_00244
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00245	wCam_contig000001:c311546-311049	wCam_00245
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpoH	wCam_contig000001:c312432-311539	wCam_00246
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00264	wCam_contig000001:327538-327666	wCam_00264
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00265	wCam_contig000001:327635-327823	wCam_00265
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rppH	wCam_contig000001:327816-328301	wCam_00266
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	fabH	wCam_contig000001:c352228-351248	wCam_00291
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	plsX	wCam_contig000001:c353270-352221	wCam_00292
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ccmE	wCam_contig000001:c355375-354989	wCam_00294
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00295	wCam_contig000001:c355496-355359	wCam_00295
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	birA	wCam_contig000001:c356284-355493	wCam_00296
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nuoN	wCam_contig000001:c357680-356286	wCam_00297
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nuoM	wCam_contig000001:c359086-357677	wCam_00298
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nuoK	wCam_contig000001:c361292-360984	wCam_00300
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nuoJ	wCam_contig000001:c361897-361283	wCam_00301
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	atpA	wCam_contig000001:c410447-408906	wCam_00330
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	atpH	wCam_contig000001:c411003-410437	wCam_00331
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00339	wCam_contig000001:421178-421300	wCam_00339
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rluC	wCam_contig000001:421284-422231	wCam_00340
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pstB	wCam_contig000001:c426540-425725	wCam_00344
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	dapB	wCam_contig000001:c427274-426480	wCam_00345
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00352	wCam_contig000001:436199-436519	wCam_00352
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pyrG	wCam_contig000001:436519-438153	wCam_00353
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	metC	wCam_contig000001:c443419-442157	wCam_00357
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	bolA	wCam_contig000001:c443648-443364	wCam_00358
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpsR	wCam_contig000001:c465048-464773	wCam_00377
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpsF	wCam_contig000001:c465824-465048	wCam_00378
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00396	wCam_contig000001:c485460-485335	wCam_00396
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00397	wCam_contig000001:c485620-485450	wCam_00397
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00431	wCam_contig000001:c535132-534962	wCam_00431
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00432	wCam_contig000001:c536051-535110	wCam_00432
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	cdsA	wCam_contig000001:c537699-537052	wCam_00436
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ispU	wCam_contig000001:c538363-537668	wCam_00437
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	tsf	wCam_contig000001:c540911-540036	wCam_00441
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpsB	wCam_contig000001:c541740-540892	wCam_00442
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00448	wCam_contig000001:c553319-552099	wCam_00448
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00449	wCam_contig000001:c554047-553316	wCam_00449
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	lolE	wCam_contig000001:c555269-554040	wCam_00450
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00452	wCam_contig000001:c558094-557729	wCam_00452
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	sdhC	wCam_contig000001:c558468-558091	wCam_00453
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpsK	wCam_contig000001:c567953-567492	wCam_00463
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpsM	wCam_contig000001:c568269-567901	wCam_00464
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	adk	wCam_contig000001:c568982-568329	wCam_00465
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	secY	wCam_contig000001:c570307-568979	wCam_00466
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplX	wCam_contig000001:c573850-573533	wCam_00474
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplN	wCam_contig000001:c574209-573850	wCam_00475
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplW	wCam_contig000001:c577502-577215	wCam_00483
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplD	wCam_contig000001:c578113-577499	wCam_00484
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplC	wCam_contig000001:c578841-578116	wCam_00485
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rpsJ	wCam_contig000001:c579194-578838	wCam_00486
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00495	wCam_contig000001:c584597-584382	wCam_00495
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00496	wCam_contig000001:c584755-584540	wCam_00496
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	lpd3	wCam_contig000001:c598833-597445	wCam_00509
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	bamB	wCam_contig000001:c599935-598826	wCam_00510
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pdxJ_1	wCam_contig000001:600613-600849	wCam_00511
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pdxJ_2	wCam_contig000001:600837-601250	wCam_00512
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00523	wCam_contig000001:c610199-609999	wCam_00523
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00524	wCam_contig000001:c610383-610186	wCam_00524
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nuoH	wCam_contig000001:c618894-617869	wCam_00533
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	nqo3	wCam_contig000001:c620929-618878	wCam_00534
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00538	wCam_contig000001:c624807-624022	wCam_00538
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	def	wCam_contig000001:c625336-624800	wCam_00539
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00566	wCam_contig000001:655283-655939	wCam_00566
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	cysS	wCam_contig000001:655932-657305	wCam_00567
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	uvrC	wCam_contig000001:c677465-675813	wCam_00584
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	glyS	wCam_contig000001:c679567-677462	wCam_00585
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00589	wCam_contig000001:c684944-684807	wCam_00589
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00590	wCam_contig000001:c685084-684944	wCam_00590
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ygfA	wCam_contig000001:c685823-685128	wCam_00591
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pyrK	wCam_contig000001:c686436-685807	wCam_00592
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	virB4_1	wCam_contig000001:707261-709666	wCam_00608
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00609	wCam_contig000001:709659-712208	wCam_00609
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00610	wCam_contig000001:712208-714646	wCam_00610
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00611	wCam_contig000001:714646-717612	wCam_00611
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	secE	wCam_contig000001:736078-736278	wCam_00629
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00630	wCam_contig000001:736268-737098	wCam_00630
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	cspA	wCam_contig000001:c751939-751685	wCam_00638
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00639	wCam_contig000001:c752052-751921	wCam_00639
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	mrpB	wCam_contig000001:759593-760021	wCam_00649
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	mrpC	wCam_contig000001:760008-760334	wCam_00650
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	pth	wCam_contig000001:c769117-768569	wCam_00655
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	rplY	wCam_contig000001:c769728-769117	wCam_00656
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00689	wCam_contig000001:811075-811272	wCam_00689
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00690	wCam_contig000001:811250-811426	wCam_00690
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	iscU	wCam_contig000001:851203-851595	wCam_00734
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	iscA	wCam_contig000001:851558-852007	wCam_00735
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00736	wCam_contig000001:851964-852458	wCam_00736
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	hscA	wCam_contig000001:852436-854211	wCam_00737
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	proS	wCam_contig000001:867215-868492	wCam_00749
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	acpS	wCam_contig000001:868489-868866	wCam_00750
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	ffh	wCam_contig000001:c901801-900458	wCam_00780
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	hyfB	wCam_contig000001:c903333-901786	wCam_00781
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	era	wCam_contig000001:931097-931981	wCam_00804
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00805	wCam_contig000001:931974-932798	wCam_00805
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00806	wCam_contig000001:932773-932934	wCam_00806
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	prs	wCam_contig000001:933257-934291	wCam_00807
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	gatC	wCam_contig000001:934281-934634	wCam_00808
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	eno	wCam_contig000001:957931-959196	wCam_00830
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	obg	wCam_contig000001:959193-960218	wCam_00831

DiscRep_ALL:OVERLAPPING_CDS::7 coding regions overlap another coding region with a similar or identical name.
DiscRep_SUB:OVERLAPPING_CDS::7 coding regions overlap another coding region with a similar or identical name that do not have the appropriate note text
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	putative zinc protease	wCam_contig000001:c31386-30073	wCam_00032
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	putative zinc protease	wCam_contig000001:c32713-31373	wCam_00033
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	Pyridoxine 5'-phosphate synthase	wCam_contig000001:600613-600849	wCam_00511
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	Pyridoxine 5'-phosphate synthase	wCam_contig000001:600837-601250	wCam_00512
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wCam_contig000001:709659-712208	wCam_00609
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wCam_contig000001:712208-714646	wCam_00610
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	TrbL/VirB6 plasmid conjugal transfer protein	wCam_contig000001:714646-717612	wCam_00611

DiscRep_ALL:RNA_CDS_OVERLAP::2 coding regions overlap RNA features
FATAL: DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions are completely contained in RNAs
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:782-883	wCam_00002
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:tmRNA	transfer-messenger RNA, SsrA	wCam_contig000001:645-974	wCam_00001

DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs (no containment)
DiscRep_SUB:RNA_CDS_OVERLAP::1 coding regions overlap RNAs on the same strand (no containment)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	Stringent starvation protein B	wCam_contig000001:972-1409	wCam_00003
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:tmRNA	transfer-messenger RNA, SsrA	wCam_contig000001:645-974	wCam_00001

DiscRep_ALL:SUSPECT_PRODUCT_NAMES::2 product_names contain suspect phrase or characters
DiscRep_SUB:SUSPECT_PRODUCT_NAMES::May contain database identifier more appropriate in note; remove from product name
DiscRep_SUB:SUSPECT_PRODUCT_NAMES::2 features Contains underscore
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	Putative O-methyltransferase/MSMEI_4947	wCam_contig000001:c317227-316577	wCam_00251
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	Aspartate kinase Ask_LysC	wCam_contig000001:322350-323513	wCam_00259

DiscRep_ALL:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain suspicious phrases
DiscRep_SUB:DISC_SUSPICIOUS_NOTE_TEXT::6 note texts contain 'homolog'
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:c151620-149800	wCam_00121
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:284435-284917	wCam_00226
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:315922-316575	wCam_00250
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:481362-481976	wCam_00391
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:834447-834920	wCam_00712
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:CDS	hypothetical protein	wCam_contig000001:851964-852458	wCam_00736

DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.

FATAL: DiscRep_ALL:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contain suspect phrase
FATAL: DiscRep_SUB:DISC_SUSPECT_RRNA_PRODUCTS::1 rRNA product names contains 'partial'
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:rRNA	5S ribosomal RNA (partial)	wCam_contig000001:c668930-668841	wCam_00579

DiscRep_ALL:ONCALLER_COMMENT_PRESENT::1 comment descriptors were found (all same)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001:Annotated using prokka 1.10 from http://www.vicbioinformatics.com

DiscRep_ALL:SHORT_PROT_SEQUENCES::72 protein sequences are shorter than 50 aa.
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00002 (length 33)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00017 (length 38)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00020 (length 38)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00021 (length 30)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00049 (length 42)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00066 (length 35)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00074 (length 39)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00085 (length 45)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00102 (length 39)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00139 (length 45)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00143 (length 37)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00165 (length 49)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00166 (length 47)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00183 (length 48)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00186 (length 32)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00221 (length 41)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00239 (length 31)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00256 (length 43)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00257 (length 48)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00261 (length 36)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00264 (length 42)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00287 (length 45)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00293 (length 49)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00295 (length 45)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00333 (length 36)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00339 (length 40)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00360 (length 34)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00362 (length 41)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00363 (length 47)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00396 (length 41)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00422 (length 31)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00427 (length 44)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00428 (length 33)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00430 (length 42)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00497 (length 34)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00501 (length 32)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00508 (length 46)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00536 (length 46)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00545 (length 35)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00546 (length 40)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00552 (length 47)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00569 (length 41)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00589 (length 45)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00590 (length 46)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00595 (length 31)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00615 (length 48)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00616 (length 43)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00639 (length 43)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00653 (length 48)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00664 (length 46)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00667 (length 43)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00686 (length 41)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00688 (length 30)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00702 (length 30)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00705 (length 38)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00706 (length 41)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00707 (length 43)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00718 (length 47)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00732 (length 43)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00740 (length 36)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00741 (length 48)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00744 (length 29)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00754 (length 31)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00766 (length 42)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00768 (length 29)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00776 (length 46)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00799 (length 40)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00803 (length 37)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00811 (length 29)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00812 (length 47)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00816 (length 46)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00817 (length 42)

DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::1 bioseqs are missing GenomeAssembly structured comments
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)

DiscRep_ALL:FIND_OVERLAPPED_GENES::1 genes completely overlapped by other genes
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Gene	wCam_00002	wCam_contig000001:782-883	wCam_00002

DiscRep_ALL:MOLTYPE_NOT_MRNA::1 molecule types are not set as mRNA.
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)

DiscRep_ALL:TECHNIQUE_NOT_TSA::1 technique are not set as TSA
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)

DiscRep_ALL:MISSING_STRUCTURED_COMMENT::1 sequences do not include structured comments.
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)

DiscRep_ALL:MISSING_PROJECT::794 sequences do not include project.
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00002 (length 33)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00003 (length 145)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00004 (length 205)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00005 (length 265)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00006 (length 416)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00007 (length 124)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00008 (length 235)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00009 (length 135)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00010 (length 110)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00011 (length 345)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00012 (length 97)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00013 (length 119)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00014 (length 247)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00015 (length 336)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00016 (length 397)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00017 (length 38)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00018 (length 406)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00019 (length 425)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00020 (length 38)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00021 (length 30)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00022 (length 321)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00023 (length 98)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00024 (length 161)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00025 (length 87)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00026 (length 432)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00027 (length 423)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00028 (length 518)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00029 (length 238)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00030 (length 174)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00031 (length 188)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00032 (length 437)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00033 (length 446)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00034 (length 154)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00035 (length 157)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00036 (length 111)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00037 (length 123)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00038 (length 290)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00039 (length 169)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00040 (length 336)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00041 (length 80)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00042 (length 941)
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_00043 (length 55)
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FATAL: DiscRep_ALL:RRNA_NAME_CONFLICTS::1 rRNA product names are not standard. Correct the names to the standard format, eg "16S ribosomal RNA"
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:rRNA	5S ribosomal RNA (partial)	wCam_contig000001:c668930-668841	wCam_00579

DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::1 Molinfos are missing field technique
/home/yquentin/work/wolbachia/prokka/Cameroon/wCam:Prokka:wCam_contig000001 (length 960618)