mar. 13 sept. 2011
ERR022486_2.fastq
Summary
Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Kmer Content
Basic Statistics
Measure | Value |
---|---|
Filename | ERR022486_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31504560 |
Sequence length | 76 |
%GC | 44 |
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 44325 | 0.14069391859464153 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 42345 | 0.13440911410919562 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTTT | 15244720 | 4.3027563 | 7.4825525 | 2 |
GTGTG | 8067190 | 4.2972207 | 5.4241505 | 6 |
CACAC | 8281850 | 4.2583714 | 7.4245706 | 7 |
AAAAA | 14754945 | 4.062385 | 7.8247914 | 2 |
ACACA | 9266090 | 3.8689086 | 7.513649 | 6 |
TGTGT | 8972115 | 3.867356 | 5.2740717 | 7 |
CTGGA | 4100200 | 2.1549397 | 5.705727 | 1 |
CTCCA | 4082465 | 2.1095772 | 5.776535 | 6 |
TCCAG | 3880505 | 2.022273 | 6.3617907 | 7 |
GTTTT | 4845500 | 1.690098 | 7.3602953 | 1 |
GTTTG | 3900855 | 1.6814313 | 6.1718044 | 1 |
ATCCA | 2854815 | 1.197917 | 5.5591817 | 6 |