Index of /~formation/snakemake

	Name	Last modified	Size	Description
	Parent Directory		-
	cluster.cmd	2018-09-20 17:28	822
	Snakemake_resources.txt	2018-09-21 09:24	2.7K
	Snakefile.oxe2	2018-09-20 11:18	215
	Snakefile.olivier	2018-09-20 11:18	1
	Snakefile.exo1	2018-09-20 11:18	154
	Snakefile.ck	2018-09-20 11:18	578

Snakemake training 20/21 septembre 2018

• Slides https://slides.com/johanneskoester/snakemake-tutorial#/
• Tuto : https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html#tutorial
• Workflows existants: https://github.com/snakemake-workflows/docs
  • rna-seq-star-deseq2
  • dna-seq-gatk-variant-calling
  • accel-amplicon-trimming
  • single-cell-rna-seq