Report for Toulligqc-report-2024-11-21-150238Run statistics ⓘ
| Measure | Value |
|---|---|
| Report name | Toulligqc-report-2024-11-21-150238 |
| Experiment group | Project1 |
| Sample ID | sampleTest1 |
| Run ID | Unknown |
| Run date | 2024-10-28 |
| Run duration | 95h59m50s |
| Flowcell ID | PBA27171 |
| Flowcell product code | FLO-PRO114M |
| Flowcell version | R10.4.1 |
| Kit | Unknown |
| Sequencing kit | SQK-LSK114 |
| Barcode kits | EXP-C9S001,EXP-PBC001,EXP-PBC096 |
| Selected speed (bps) | 400bps |
| Sample frequency (Hz) | 5khz |
| Yield | 103.94G |
| Read count | 17,370,280 |
| N50 (bp) | 13,803 |
| L50 | 14,563,039 |
Device and software ⓘ
| Measure | Value |
|---|---|
| Device type | PromethION A-Series |
| Device ID | PCA100302 |
| Device hostname | Unknown |
| Device OS | Unknown |
| Distribution version | Unknown |
| MinKNOW version | 24.06.10 |
| Basecaller name | Dorado |
| Basecaller version | null |
| Basecaller analysis | 1d_basecalling |
| Basecalling date | 2024-10-28 |
| Model file | dna_r10.4.1_e8.2_400bps_5khz_sup.cfg |
| Min qscore threshold | 10 |
| ToulligQC version | 2.7.1 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 17,370,280 | 15,742,481 | 1,627,799 |
| percent | 100.00 | 90.63 | 9.37 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 17,370,280 | 15,742,481 | 1,627,799 |
| mean | 5,983.72 | 6,093.47 | 4,922.33 |
| std | 6,974.18 | 6,910.21 | 7,482.41 |
| min | 1.00 | 1.00 | 1.00 |
| 25% | 487.00 | 506.00 | 333.00 |
| median | 2,890.00 | 3,012.00 | 1,710.00 |
| 75% | 10,441.00 | 10,759.00 | 7,565.00 |
| max | 1,260,973.00 | 398,562.00 | 1,260,973.00 |
| All reads | Pass reads | Fail reads | |
|---|---|---|---|
| count | 17,370,280 | 15,742,481 | 1,627,799 |
| mean | 20.56 | 21.98 | 6.83 |
| std | 6.12 | 4.56 | 2.05 |
| min | 1.00 | 10.00 | 1.00 |
| 25% | 17.71 | 19.35 | 5.72 |
| median | 22.02 | 22.54 | 7.20 |
| 75% | 24.60 | 24.86 | 8.32 |
| max | 45.17 | 45.17 | 9.00 |