Nextflow workflow report

[clever_euler]

Workflow execution completed successfully!
Run times
22-oct.-2021 18:41:34 - 23-oct.-2021 10:10:19 (duration: 15h 28m 45s)
  4482 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run nf-core/sarek -c ./genotoul_1.config --input /work2/project/sigenae/Philippe/NextFlow/Chicken_Test_2_Full_Samples/input.tsv --genomes_base /work2/project/sigenae/Philippe/NextFlow/Chicken_Test_2_Full_Samples/Data/ --genome Gallus_gallus-5.0 -resume --tools HaplotypeCaller,FreeBayes,mpileup --generate_gvcf
CPU-Hours
462.0
Launch directory
/work2/project/sigenae/Philippe/NextFlow/Chicken_Test_2_Full_Samples
Work directory
/work2/project/sigenae/Philippe/NextFlow/Chicken_Test_2_Full_Samples/work
Project directory
/home/sigenae/.nextflow/assets/nf-core/sarek
Script name
main.nf
Script ID
7038b78fec38683f7c82b37e6d822ef7
Workflow session
a0671781-7be0-4109-ba67-c843d3de0e4d
Workflow repository
https://github.com/nf-core/sarek, revision master (commit hash 68b9930a74962f3c42eee71f51e6dd2646269199)
Workflow profile
standard
Workflow container
nfcore/sarek:2.7.1
Container engine
singularity
Nextflow version
version 21.04.1, build 5556 (14-05-2021 15:20 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)