Sample	Bcftools Stats_mqc-generalstats-bcftools_stats-tstv	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels	Picard_mqc-generalstats-picard-PERCENT_DUPLICATION	Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped	QualiMap_mqc-generalstats-qualimap-percentage_aligned	Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped_percent	QualiMap_mqc-generalstats-qualimap-median_insert_size	QualiMap_mqc-generalstats-qualimap-mean_coverage	QualiMap_mqc-generalstats-qualimap-general_error_rate	QualiMap_mqc-generalstats-qualimap-30_x_pc	QualiMap_mqc-generalstats-qualimap-10_x_pc	Samtools Stats_mqc-generalstats-samtools_stats-raw_total_sequences	QualiMap_mqc-generalstats-qualimap-1_x_pc	QualiMap_mqc-generalstats-qualimap-avg_gc	QualiMap_mqc-generalstats-qualimap-median_coverage	QualiMap_mqc-generalstats-qualimap-mapped_reads	Samtools Stats_mqc-generalstats-samtools_stats-error_rate	QualiMap_mqc-generalstats-qualimap-50_x_pc	QualiMap_mqc-generalstats-qualimap-5_x_pc	Samtools Stats_mqc-generalstats-samtools_stats-non_primary_alignments	QualiMap_mqc-generalstats-qualimap-total_reads	Samtools Stats_mqc-generalstats-samtools_stats-reads_MQ0_percent	Samtools Stats_mqc-generalstats-samtools_stats-reads_properly_paired_percent	FastQC_mqc-generalstats-fastqc-percent_duplicates	FastQC_mqc-generalstats-fastqc-avg_sequence_length	FastQC_mqc-generalstats-fastqc-total_sequences	FastQC_mqc-generalstats-fastqc-percent_fails	FastQC_mqc-generalstats-fastqc-percent_gc
FreeBayes_SRR7062654	2.02	6639181.0	7887526.0	510974.0	693926.0																										
FreeBayes_SRR7062655	2.05	6831390.0	8113572.0	526181.0	716421.0																										
HaplotypeCaller_SRR7062654	2.29	6709662.0	7640347.0	0.0	938064.0																										
HaplotypeCaller_SRR7062654.g	2.25	6817848.0	215349418.0	0.0	998947.0																										
HaplotypeCaller_SRR7062655	2.29	6942045.0	7905905.0	0.0	972414.0																										
HaplotypeCaller_SRR7062655.g	2.26	7058786.0	221706162.0	0.0	1035330.0																										
SRR7062654						0.032967																									
SRR7062654.recal							370874029.0	99.9100641393	99.9100641393	479	8.56130346021	0.88	43.2824931776	85.0251207804	371207878.0	90.7725045801	41.4193759487	28	370874029.0	0.008863448	1.35684502294	87.793969394	425104.0	371207878.0	7.92174135916	97.0300587209					
SRR7062654_1								99.7511230197		479	8.91489796482	0.89	47.2452801643	85.1195766972		90.772620572	41.4068321929	29	370874029.0		1.73934957642	87.8244205539		371799352.0							
SRR7062654_1_R1																											9.57109260848	90.0	185899676.0	0.0	40.0
SRR7062654_1_R2																											9.18528727263	90.0	185899676.0	0.0	41.0
SRR7062655						0.052812																									
SRR7062655.recal							373764495.0	99.912820857	99.912820857	477	8.00109222731	0.88	40.1374909518	85.0477950384	374090624.0	90.8983275619	41.4286824319	27	373764495.0	0.008901729	1.34772441985	87.877298788	448939.0	374090624.0	8.57884906519	96.5828488661					
SRR7062655_1								99.7548767434		477	9.02666263593	0.89	46.7407370368	85.201525731		90.8985167091	41.4013685941	29	373764495.0		1.92760089861	87.9257636409		374682930.0							
SRR7062655_1_R1																											11.9447800991	90.0	187341465.0	0.0	40.0
SRR7062655_1_R2																											11.6799956347	90.0	187341465.0	0.0	41.0