Assembly computation starting at: Tue Feb 28 16:39:46 2012  (v2.6 (20110517_1502))
Indexing MISE_2.107.decontaminated.clean.fasta (with quality scores)...

  -> 5043 reads, 2354189 bases.
Setting up long overlap detection...

  -> 5041 of 5041, 5041 reads to align
Building a tree for 48620 seeds...
Computing long overlap alignments...

  -> 1000 of 5041
  -> 2000 of 5041
  -> 3000 of 5041
  -> 4000 of 5041
  -> 5000 of 5041
  -> 5041 of 5041
Setting up overlap detection...

  -> 5041 of 5041, 1709 reads to align
Building a tree for 60407 seeds...
Computing alignments...

  -> 4000 of 5041
  -> 5000 of 5041
  -> 5041 of 5041
Checkpointing...
Detangling alignments...
   -> Phase 1...
   -> Phase 2...
   -> Level 1, Phase 3, Round 1...
   -> Level 1, Phase 3, Round 2...
   -> Level 1, Phase 4, Round 1...
   -> Level 1, Phase 5, Round 1...
   -> Level 1, Phase 6, Round 1...
   -> Level 1, Phase 6, Round 2...
   -> Level 1, Phase 7, Round 1...
   -> Level 1, Phase 8, Round 1...
   -> Level 1, Phase 9, Round 1...
   -> Level 2, Phase 3, Round 1...
   -> Level 2, Phase 3, Round 2...
   -> Level 2, Phase 4, Round 1...
   -> Level 2, Phase 5, Round 1...
   -> Level 2, Phase 6, Round 1...
   -> Level 2, Phase 6, Round 2...
   -> Level 2, Phase 7, Round 1...
   -> Level 2, Phase 8, Round 1...
   -> Level 2, Phase 9, Round 1...
   -> Level 3, Phase 3, Round 1...
   -> Level 3, Phase 4, Round 1...
   -> Level 3, Phase 5, Round 1...
   -> Level 3, Phase 6, Round 1...
   -> Level 3, Phase 7, Round 1...
   -> Level 3, Phase 8, Round 1...
   -> Level 3, Phase 9, Round 1...
   -> Level 4, Phase 3, Round 1...
   -> Level 4, Phase 4, Round 1...
   -> Level 4, Phase 5, Round 1...
   -> Level 4, Phase 6, Round 1...
   -> Level 4, Phase 7, Round 1...
   -> Level 4, Phase 8, Round 1...
   -> Level 4, Phase 9, Round 1...
Checkpointing...
Building contigs/scaffolds...
   -> 1 large contigs, 1 all contigs
Computing signals...

  -> 0 of 58729...Reading flowgrams...
  -> 0 of 58729...                    
  -> 0 of 58729...
  -> 0 of 58729...
  -> 10000 of 58729...
  -> 20000 of 58729...
  -> 30000 of 58729...
  -> 40000 of 58729...
  -> 50000 of 58729...
  -> 58729 of 58729...
Checkpointing...
Generating output...

  -> 0 of 58729...Reading flowgrams...
  -> 0 of 58729...                    
  -> 0 of 58729...
  -> 0 of 58729...
  -> 10000 of 58729...
  -> 20000 of 58729...
  -> 30000 of 58729...
  -> 40000 of 58729...
  -> 50000 of 58729...
  -> 58729 of 58729...
Assembly computation succeeded at: Tue Feb 28 16:40:00 2012