Nextflow workflow report

`[sick_wozniak]`

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

Error executing process > 'RNASEQ:PREPARE_GENOME:GTF2BED (ITAG2.3_genomic_Ch6.gtf)'

Caused by:
  Failed to pull singularity image
  command: singularity pull  --name depot.galaxyproject.org-singularity-perl-5.26.2.img.pulling.1759152933155 https://depot.galaxyproject.org/singularity/perl:5.26.2 > /dev/null
  status : 127
  message:
    bash: singularity: command not found

Run times

29-Sep-2025 15:35:07 - 29-Sep-2025 15:35:33 (duration: 26.2s)

0 succeeded

0 cached

0 ignored

0 failed

Nextflow command

nextflow run nf-core/rnaseq -profile genotoul -r 3.0 --input /work/user/fmt099/TP_nextflow/inputs.csv --fasta /work/user/fmt099/TP_nextflow/genome/ITAG2.3_genomic_Ch6.fasta --gtf /work/user/fmt099/TP_nextflow/annotation/ITAG2.3_genomic_Ch6.gtf --aligner star_rsem -c /work/user/fmt099/TP_nextflow/sm_config.cfg

CPU-Hours: (a few seconds)
Launch directory: /work/user/fmt099/TP_nextflow
Work directory: /work/user/fmt099/TP_nextflow/work
Project directory: /home/fmt099/.nextflow/assets/nf-core/rnaseq
Script name: main.nf
Script ID: 4b892cc54e3b768dca93d19da30a907a
Workflow session: 765128e1-62cf-4a5b-a5af-4a1016e38599
Workflow repository: https://github.com/nf-core/rnaseq, revision 3.0 (commit hash 3643a94411b65f42bce5357c5015603099556ad9)
Workflow profile: genotoul
Nextflow version: version 20.11.0-edge, build 5448 (16-11-2020 08:23 UTC)

Nextflow workflow report

`[sick_wozniak]`

Workflow execution completed unsuccessfully!

Resource Usage

CPU

Memory

Job Duration

I/O

Tasks