Module	Section	Sample Name	Source
FastQC (pre-Trimming)	all_sections	L5_6_MB8_S31_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_6_MB8_S31_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_13_BC11_S38_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_13_BC11_S38_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_1_EG1_S71_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_1_EG1_S71_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_13_BC11_S38_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_13_BC11_S38_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_4_MD4_S29_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_4_MD4_S29_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_11_MD2_S21_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_11_MD2_S21_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_5_MD10_S30_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_5_MD10_S30_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_13_MB5_S23_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_13_MB5_S23_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_8_SH2_S88_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L0_8_SH2_S88_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_3_EG3_S73_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_3_EG3_S73_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_4_MD4_S29_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_4_MD4_S29_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_3_MD8_S28_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_3_MD8_S28_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_15_BC13_S40_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_15_BC13_S40_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_10_MPHB2_S78_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_10_MPHB2_S78_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L8_15_HTMK99-XXII-0-4287_S49_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L8_15_HTMK99-XXII-0-4287_S49_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_1_MD15_S26_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_1_MD15_S26_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_1_MD15_S26_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_1_MD15_S26_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_2_EG5_S82_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L0_2_EG5_S82_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_8_MD16_S33_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_8_MD16_S33_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_15_BC13_S40_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_15_BC13_S40_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_11_MPHB3_S79_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_11_MPHB3_S79_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_6_MB8_S31_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_6_MB8_S31_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_13_MB5_S23_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_13_MB5_S23_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_5_MD5_S15_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_5_MD5_S15_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_3_MD8_S28_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_3_MD8_S28_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_14_BC12_S39_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_14_BC12_S39_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_1_26-52_S50_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L9_1_26-52_S50_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_2_2777-17_S51_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L9_2_2777-17_S51_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_1_26-52_S50_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L9_1_26-52_S50_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_11_SCO_1338_S63_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L10_11_SCO_1338_S63_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_12_MD9_S37_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_12_MD9_S37_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_2_EG5_S82_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L0_2_EG5_S82_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_4_MB9_S14_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_4_MB9_S14_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_12_MPHB4_S80_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_12_MPHB4_S80_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_5_MD5_S15_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_5_MD5_S15_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_2_EG2_S72_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_2_EG2_S72_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_8_MD16_S33_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_8_MD16_S33_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_7_MD3_S32_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_7_MD3_S32_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_7_MD3_S32_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_7_MD3_S32_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_8_MB4_S18_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_8_MB4_S18_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_11_MD2_S21_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_11_MD2_S21_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_11_SCO_1338_S63_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L10_11_SCO_1338_S63_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_3_EG3_S73_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_3_EG3_S73_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_2_EG2_S72_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_2_EG2_S72_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_2_2777-17_S51_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L9_2_2777-17_S51_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_2_MD7_S27_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_2_MD7_S27_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_9_MD12_S19_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_9_MD12_S19_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_10_MPHB2_S78_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_10_MPHB2_S78_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_13_SCO_2764_S65_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L10_13_SCO_2764_S65_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_8_SH2_S88_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L0_8_SH2_S88_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_12_MD9_S37_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_12_MD9_S37_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_2_MD7_S27_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_2_MD7_S27_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_12_MPHB4_S80_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_12_MPHB4_S80_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_9_MD12_S19_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_9_MD12_S19_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_1_EG1_S71_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_1_EG1_S71_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_14_BC12_S39_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_14_BC12_S39_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_4_MB9_S14_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_4_MB9_S14_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_13_SCO_2764_S65_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L10_13_SCO_2764_S65_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_5_MD10_S30_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L5_5_MD10_S30_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L8_15_HTMK99-XXII-0-4287_S49_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L8_15_HTMK99-XXII-0-4287_S49_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_11_MPHB3_S79_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L2_11_MPHB3_S79_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_8_MB4_S18_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc_raw/L4_8_MB4_S18_R2_001_raw_fastqc.zip
Adapter Removal	all_sections	L10_11_SCO_1338_S63_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L10_11_SCO_1338_S63_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_4_MB9_S14_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L4_4_MB9_S14_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_3_MD8_S28_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_3_MD8_S28_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_1_MD15_S26_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_1_MD15_S26_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L0_8_SH2_S88_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L0_8_SH2_S88_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_2_EG2_S72_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L2_2_EG2_S72_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_13_MB5_S23_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L4_13_MB5_S23_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_8_MB4_S18_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L4_8_MB4_S18_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_5_MD5_S15_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L4_5_MD5_S15_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_2_2777-17_S51_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L9_2_2777-17_S51_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_7_MD3_S32_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_7_MD3_S32_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_4_MD4_S29_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_4_MD4_S29_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L0_2_EG5_S82_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L0_2_EG5_S82_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_5_MD10_S30_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_5_MD10_S30_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_15_BC13_S40_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_15_BC13_S40_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_13_BC11_S38_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_13_BC11_S38_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_6_MB8_S31_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_6_MB8_S31_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_2_MD7_S27_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_2_MD7_S27_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_14_BC12_S39_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_14_BC12_S39_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_12_MD9_S37_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_12_MD9_S37_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_12_MPHB4_S80_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L2_12_MPHB4_S80_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L8_15_HTMK99-XXII-0-4287_S49_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L8_15_HTMK99-XXII-0-4287_S49_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_1_26-52_S50_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L9_1_26-52_S50_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_11_MPHB3_S79_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L2_11_MPHB3_S79_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_10_MPHB2_S78_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L2_10_MPHB2_S78_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_11_MD2_S21_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L4_11_MD2_S21_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_3_EG3_S73_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L2_3_EG3_S73_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_1_EG1_S71_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L2_1_EG1_S71_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_9_MD12_S19_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L4_9_MD12_S19_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_8_MD16_S33_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L5_8_MD16_S33_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_13_SCO_2764_S65_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/adapter_removal/L10_13_SCO_2764_S65_R1_001.fastq_L0.pe.settings
FastQC (post-Trimming)	all_sections	L5_1_MD15_S26_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_1_MD15_S26_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_12_MD9_S37_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_12_MD9_S37_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_12_MPHB4_S80_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L2_12_MPHB4_S80_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_2_MD7_S27_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_2_MD7_S27_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_3_EG3_S73_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L2_3_EG3_S73_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_10_MPHB2_S78_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L2_10_MPHB2_S78_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L0_8_SH2_S88_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L0_8_SH2_S88_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_13_SCO_2764_S65_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L10_13_SCO_2764_S65_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L8_15_HTMK99-XXII-0-4287_S49_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L8_15_HTMK99-XXII-0-4287_S49_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L0_2_EG5_S82_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L0_2_EG5_S82_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_13_BC11_S38_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_13_BC11_S38_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_3_MD8_S28_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_3_MD8_S28_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_4_MB9_S14_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L4_4_MB9_S14_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_6_MB8_S31_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_6_MB8_S31_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_1_26-52_S50_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L9_1_26-52_S50_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_5_MD5_S15_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L4_5_MD5_S15_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_7_MD3_S32_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_7_MD3_S32_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_2_EG2_S72_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L2_2_EG2_S72_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_11_MD2_S21_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L4_11_MD2_S21_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_11_SCO_1338_S63_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L10_11_SCO_1338_S63_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_9_MD12_S19_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L4_9_MD12_S19_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_15_BC13_S40_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_15_BC13_S40_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_11_MPHB3_S79_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L2_11_MPHB3_S79_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_4_MD4_S29_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_4_MD4_S29_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_14_BC12_S39_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_14_BC12_S39_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_2_2777-17_S51_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L9_2_2777-17_S51_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_8_MD16_S33_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_8_MD16_S33_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_5_MD10_S30_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L5_5_MD10_S30_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_1_EG1_S71_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L2_1_EG1_S71_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_13_MB5_S23_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L4_13_MB5_S23_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_8_MB4_S18_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/fastqc/L4_8_MB4_S18_R1_001.fastq_L0.pe.combined_fastqc.zip
Samtools Flagstat (pre-samtools filter)	flagstat	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L4_11_MD2_S21_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_4_MD4_S29_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_14_BC12_S39_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_12_MD9_S37_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L10_11_SCO_1338_S63_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L2_3_EG3_S73_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L8_15_HTMK99-XXII-0-4287_S49_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L0_8_SH2_S88_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_2_MD7_S27_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_13_BC11_S38_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_7_MD3_S32_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_3_MD8_S28_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L9_1_26-52_S50_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L10_13_SCO_2764_S65_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L9_2_2777-17_S51_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_5_MD10_S30_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_6_MB8_S31_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_15_BC13_S40_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_8_MD16_S33_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L2_11_MPHB3_S79_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L2_10_MPHB2_S78_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L4_9_MD12_S19_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L4_5_MD5_S15_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L4_8_MB4_S18_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L2_2_EG2_S72_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L2_12_MPHB4_S80_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L0_2_EG5_S82_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L4_13_MB5_S23_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L2_1_EG1_S71_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L4_4_MB9_S14_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat/L5_1_MD15_S26_flagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_2_MD7_S27_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L2_11_MPHB3_S79_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_15_BC13_S40_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_12_MD9_S37_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_3_MD8_S28_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L9_1_26-52_S50_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_14_BC12_S39_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L4_13_MB5_S23_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L8_15_HTMK99-XXII-0-4287_S49_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L9_2_2777-17_S51_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_1_MD15_S26_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_6_MB8_S31_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_5_MD10_S30_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_8_MD16_S33_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L0_2_EG5_S82_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L2_2_EG2_S72_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_13_BC11_S38_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L10_13_SCO_2764_S65_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L4_9_MD12_S19_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L2_12_MPHB4_S80_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L4_5_MD5_S15_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L0_8_SH2_S88_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L10_11_SCO_1338_S63_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L4_4_MB9_S14_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L4_8_MB4_S18_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_4_MD4_S29_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L4_11_MD2_S21_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L2_1_EG1_S71_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L2_10_MPHB2_S78_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L2_3_EG3_S73_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/flagstat_filtered/L5_7_MD3_S32_postfilterflagstat.stats
Picard	DuplicationMetrics	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L4_5_MD5_S15_rmdup.metrics
Picard	DuplicationMetrics	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L0_2_EG5_S82_rmdup.metrics
Picard	DuplicationMetrics	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_7_MD3_S32_rmdup.metrics
Picard	DuplicationMetrics	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_1_MD15_S26_rmdup.metrics
Picard	DuplicationMetrics	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_13_BC11_S38_rmdup.metrics
Picard	DuplicationMetrics	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L2_11_MPHB3_S79_rmdup.metrics
Picard	DuplicationMetrics	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L4_13_MB5_S23_rmdup.metrics
Picard	DuplicationMetrics	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_15_BC13_S40_rmdup.metrics
Picard	DuplicationMetrics	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L4_4_MB9_S14_rmdup.metrics
Picard	DuplicationMetrics	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L2_2_EG2_S72_rmdup.metrics
Picard	DuplicationMetrics	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L9_2_2777-17_S51_rmdup.metrics
Picard	DuplicationMetrics	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_3_MD8_S28_rmdup.metrics
Picard	DuplicationMetrics	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L10_11_SCO_1338_S63_rmdup.metrics
Picard	DuplicationMetrics	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_12_MD9_S37_rmdup.metrics
Picard	DuplicationMetrics	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L4_9_MD12_S19_rmdup.metrics
Picard	DuplicationMetrics	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L8_15_HTMK99-XXII-0-4287_S49_rmdup.metrics
Picard	DuplicationMetrics	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_5_MD10_S30_rmdup.metrics
Picard	DuplicationMetrics	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_14_BC12_S39_rmdup.metrics
Picard	DuplicationMetrics	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_8_MD16_S33_rmdup.metrics
Picard	DuplicationMetrics	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L9_1_26-52_S50_rmdup.metrics
Picard	DuplicationMetrics	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L2_3_EG3_S73_rmdup.metrics
Picard	DuplicationMetrics	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_6_MB8_S31_rmdup.metrics
Picard	DuplicationMetrics	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L10_13_SCO_2764_S65_rmdup.metrics
Picard	DuplicationMetrics	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_4_MD4_S29_rmdup.metrics
Picard	DuplicationMetrics	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L2_1_EG1_S71_rmdup.metrics
Picard	DuplicationMetrics	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L2_12_MPHB4_S80_rmdup.metrics
Picard	DuplicationMetrics	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L4_8_MB4_S18_rmdup.metrics
Picard	DuplicationMetrics	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L2_10_MPHB2_S78_rmdup.metrics
Picard	DuplicationMetrics	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L4_11_MD2_S21_rmdup.metrics
Picard	DuplicationMetrics	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L0_8_SH2_S88_rmdup.metrics
Picard	DuplicationMetrics	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/markdup/L5_2_MD7_S27_rmdup.metrics
Preseq	all_sections	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L4_13_MB5_S23.filtered.preseq
Preseq	all_sections	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_12_MD9_S37.filtered.preseq
Preseq	all_sections	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L0_8_SH2_S88.filtered.preseq
Preseq	all_sections	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L4_9_MD12_S19.filtered.preseq
Preseq	all_sections	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_14_BC12_S39.filtered.preseq
Preseq	all_sections	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_15_BC13_S40.filtered.preseq
Preseq	all_sections	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L2_10_MPHB2_S78.filtered.preseq
Preseq	all_sections	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L0_2_EG5_S82.filtered.preseq
Preseq	all_sections	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L9_1_26-52_S50.filtered.preseq
Preseq	all_sections	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_13_BC11_S38.filtered.preseq
Preseq	all_sections	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L10_13_SCO_2764_S65.filtered.preseq
Preseq	all_sections	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_6_MB8_S31.filtered.preseq
Preseq	all_sections	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L8_15_HTMK99-XXII-0-4287_S49.filtered.preseq
Preseq	all_sections	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L4_11_MD2_S21.filtered.preseq
Preseq	all_sections	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_7_MD3_S32.filtered.preseq
Preseq	all_sections	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_4_MD4_S29.filtered.preseq
Preseq	all_sections	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_8_MD16_S33.filtered.preseq
Preseq	all_sections	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L2_2_EG2_S72.filtered.preseq
Preseq	all_sections	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L2_3_EG3_S73.filtered.preseq
Preseq	all_sections	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L4_8_MB4_S18.filtered.preseq
Preseq	all_sections	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_3_MD8_S28.filtered.preseq
Preseq	all_sections	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L10_11_SCO_1338_S63.filtered.preseq
Preseq	all_sections	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_5_MD10_S30.filtered.preseq
Preseq	all_sections	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L2_1_EG1_S71.filtered.preseq
Preseq	all_sections	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_1_MD15_S26.filtered.preseq
Preseq	all_sections	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L2_12_MPHB4_S80.filtered.preseq
Preseq	all_sections	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L5_2_MD7_S27.filtered.preseq
Preseq	all_sections	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L4_4_MB9_S14.filtered.preseq
Preseq	all_sections	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L4_5_MD5_S15.filtered.preseq
Preseq	all_sections	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L9_2_2777-17_S51.filtered.preseq
Preseq	all_sections	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/preseq/L2_11_MPHB3_S79.filtered.preseq
DamageProfiler	all_sections	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof120/dmgprof.json
DamageProfiler	all_sections	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof32/dmgprof.json
DamageProfiler	all_sections	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof8/dmgprof.json
DamageProfiler	all_sections	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof128/dmgprof.json
DamageProfiler	all_sections	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof24/dmgprof.json
DamageProfiler	all_sections	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof208/dmgprof.json
DamageProfiler	all_sections	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof232/dmgprof.json
DamageProfiler	all_sections	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof160/dmgprof.json
DamageProfiler	all_sections	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof112/dmgprof.json
DamageProfiler	all_sections	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof136/dmgprof.json
DamageProfiler	all_sections	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof216/dmgprof.json
DamageProfiler	all_sections	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof104/dmgprof.json
DamageProfiler	all_sections	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof48/dmgprof.json
DamageProfiler	all_sections	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof184/dmgprof.json
DamageProfiler	all_sections	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof40/dmgprof.json
DamageProfiler	all_sections	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof144/dmgprof.json
DamageProfiler	all_sections	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof248/dmgprof.json
DamageProfiler	all_sections	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof240/dmgprof.json
DamageProfiler	all_sections	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof64/dmgprof.json
DamageProfiler	all_sections	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof88/dmgprof.json
DamageProfiler	all_sections	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof96/dmgprof.json
DamageProfiler	all_sections	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof80/dmgprof.json
DamageProfiler	all_sections	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof200/dmgprof.json
DamageProfiler	all_sections	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof16/dmgprof.json
DamageProfiler	all_sections	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof176/dmgprof.json
DamageProfiler	all_sections	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof192/dmgprof.json
DamageProfiler	all_sections	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof152/dmgprof.json
DamageProfiler	all_sections	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof224/dmgprof.json
DamageProfiler	all_sections	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof72/dmgprof.json
DamageProfiler	all_sections	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof168/dmgprof.json
DamageProfiler	all_sections	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/damageprofiler/dmgprof56/dmgprof.json
mtnucratio	all_sections	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L2_1_EG1_S71_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_1_MD15_S26_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L4_11_MD2_S21_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L9_2_2777-17_S51_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L8_15_HTMK99-XXII-0-4287_S49_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_8_MD16_S33_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_14_BC12_S39_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_7_MD3_S32_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L4_9_MD12_S19_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_13_BC11_S38_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L9_1_26-52_S50_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L10_13_SCO_2764_S65_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L4_4_MB9_S14_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L4_8_MB4_S18_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_4_MD4_S29_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_6_MB8_S31_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L4_13_MB5_S23_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L2_10_MPHB2_S78_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L0_8_SH2_S88_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L10_11_SCO_1338_S63_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L2_3_EG3_S73_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_5_MD10_S30_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L2_2_EG2_S72_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L4_5_MD5_S15_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_2_MD7_S27_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L2_12_MPHB4_S80_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_12_MD9_S37_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_3_MD8_S28_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L0_2_EG5_S82_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L5_15_BC13_S40_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/mutnucratio/L2_11_MPHB3_S79_rmdup.bam.mtnucratiomtnuc.json
QualiMap	genome_results	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap96/L2_3_EG3_S73_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap168/L5_6_MB8_S31_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap56/L5_1_MD15_S26_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap160/L5_2_MD7_S27_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap16/L2_2_EG2_S72_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap144/L10_11_SCO_1338_S63_rmdup_stats/genome_results.txt
QualiMap	genome_results	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap192/L8_15_HTMK99-XXII-0-4287_S49_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap216/L2_10_MPHB2_S78_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap40/L5_7_MD3_S32_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap200/L4_8_MB4_S18_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap80/L10_13_SCO_2764_S65_rmdup_stats/genome_results.txt
QualiMap	genome_results	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap128/L0_2_EG5_S82_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap152/L5_14_BC12_S39_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap208/L4_13_MB5_S23_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap248/L2_11_MPHB3_S79_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap48/L4_5_MD5_S15_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap104/L4_4_MB9_S14_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap232/L5_5_MD10_S30_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap88/L9_2_2777-17_S51_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap184/L9_1_26-52_S50_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap72/L4_9_MD12_S19_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap224/L5_12_MD9_S37_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap120/L5_13_BC11_S38_rmdup_stats/genome_results.txt
QualiMap	genome_results	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap8/L0_8_SH2_S88_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap136/L4_11_MD2_S21_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap24/L5_4_MD4_S29_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap240/L2_12_MPHB4_S80_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap32/L2_1_EG1_S71_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap64/L5_3_MD8_S28_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap176/L5_15_BC13_S40_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap112/L5_8_MD16_S33_rmdup_stats/genome_results.txt
QualiMap	coverage_histogram	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap96/L2_3_EG3_S73_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap168/L5_6_MB8_S31_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap56/L5_1_MD15_S26_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap160/L5_2_MD7_S27_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap16/L2_2_EG2_S72_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap144/L10_11_SCO_1338_S63_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap192/L8_15_HTMK99-XXII-0-4287_S49_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap216/L2_10_MPHB2_S78_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap40/L5_7_MD3_S32_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap200/L4_8_MB4_S18_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap80/L10_13_SCO_2764_S65_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap128/L0_2_EG5_S82_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap152/L5_14_BC12_S39_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap208/L4_13_MB5_S23_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap248/L2_11_MPHB3_S79_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap48/L4_5_MD5_S15_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap104/L4_4_MB9_S14_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap232/L5_5_MD10_S30_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap88/L9_2_2777-17_S51_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap184/L9_1_26-52_S50_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap72/L4_9_MD12_S19_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap224/L5_12_MD9_S37_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap120/L5_13_BC11_S38_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap8/L0_8_SH2_S88_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap136/L4_11_MD2_S21_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap24/L5_4_MD4_S29_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap240/L2_12_MPHB4_S80_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap32/L2_1_EG1_S71_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap64/L5_3_MD8_S28_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap176/L5_15_BC13_S40_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap112/L5_8_MD16_S33_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	mapped_gc_distribution	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap96/L2_3_EG3_S73_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap168/L5_6_MB8_S31_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap56/L5_1_MD15_S26_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap160/L5_2_MD7_S27_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap16/L2_2_EG2_S72_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap144/L10_11_SCO_1338_S63_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap192/L8_15_HTMK99-XXII-0-4287_S49_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap216/L2_10_MPHB2_S78_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap40/L5_7_MD3_S32_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap200/L4_8_MB4_S18_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap80/L10_13_SCO_2764_S65_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap128/L0_2_EG5_S82_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap152/L5_14_BC12_S39_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap208/L4_13_MB5_S23_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap248/L2_11_MPHB3_S79_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap48/L4_5_MD5_S15_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap104/L4_4_MB9_S14_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap232/L5_5_MD10_S30_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap88/L9_2_2777-17_S51_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap184/L9_1_26-52_S50_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap72/L4_9_MD12_S19_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap224/L5_12_MD9_S37_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap120/L5_13_BC11_S38_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap8/L0_8_SH2_S88_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap136/L4_11_MD2_S21_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap24/L5_4_MD4_S29_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap240/L2_12_MPHB4_S80_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap32/L2_1_EG1_S71_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap64/L5_3_MD8_S28_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap176/L5_15_BC13_S40_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/qualimap/qualimap112/L5_8_MD16_S33_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
Bcftools	stats	L2_1_EG1_S71	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats16
Bcftools	stats	L4_13_MB5_S23	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats152
Bcftools	stats	L5_3_MD8_S28	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats24
Bcftools	stats	L8_15_HTMK99-XXII-0-4287_S49	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats144
Bcftools	stats	L9_2_2777-17_S51	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats120
Bcftools	stats	L5_1_MD15_S26	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats112
Bcftools	stats	L4_8_MB4_S18	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats72
Bcftools	stats	L5_7_MD3_S32	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats248
Bcftools	stats	L4_4_MB9_S14	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats232
Bcftools	stats	L5_12_MD9_S37	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats80
Bcftools	stats	L0_2_EG5_S82	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats200
Bcftools	stats	L2_12_MPHB4_S80	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats56
Bcftools	stats	L5_14_BC12_S39	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats136
Bcftools	stats	L4_9_MD12_S19	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats32
Bcftools	stats	L5_13_BC11_S38	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats240
Bcftools	stats	L2_2_EG2_S72	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats176
Bcftools	stats	L5_8_MD16_S33	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats128
Bcftools	stats	L9_1_26-52_S50	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats104
Bcftools	stats	L5_2_MD7_S27	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats64
Bcftools	stats	L5_5_MD10_S30	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats88
Bcftools	stats	L10_13_SCO_2764_S65	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats192
Bcftools	stats	L5_15_BC13_S40	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats160
Bcftools	stats	L4_11_MD2_S21	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats40
Bcftools	stats	L2_11_MPHB3_S79	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats168
Bcftools	stats	L5_6_MB8_S31	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats48
Bcftools	stats	L4_5_MD5_S15	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats208
Bcftools	stats	L10_11_SCO_1338_S63	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats216
Bcftools	stats	L2_10_MPHB2_S78	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats96
Bcftools	stats	L5_4_MD4_S29	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats184
Bcftools	stats	L0_8_SH2_S88	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats8
Bcftools	stats	L2_3_EG3_S73	/work/project/crucial/Sarah/7-EAGER/NC_001960.1_BIS_RESULTS/work/87/819cd22529c0be4f18f2ec2d249e5d/bcftools_stats224