Sample	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-total_sequences	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-avg_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_gc	Adapter Removal_mqc-generalstats-adapter_removal-percent_aligned	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-total_sequences	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-avg_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_gc	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_duplicates	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-median_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_fails	Adapter Removal_mqc-generalstats-adapter_removal-aligned_total	Adapter Removal_mqc-generalstats-adapter_removal-percent_collapsed	Adapter Removal_mqc-generalstats-adapter_removal-percent_discarded	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_duplicates	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-median_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_fails	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-flagstat_total	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-flagstat_total	endorSpy_mqc-generalstats-endorspy-endogenous_dna	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed	endorSpy_mqc-generalstats-endorspy-endogenous_dna_post	Picard_mqc-generalstats-picard-PERCENT_DUPLICATION	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-mean_readlength	DamageProfiler_mqc-generalstats-damageprofiler-median	mtnucratio_mqc-generalstats-mtnucratio-mtreads	mtnucratio_mqc-generalstats-mtnucratio-mt_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-mt_nuc_ratio	QualiMap_mqc-generalstats-qualimap-mapped_reads	QualiMap_mqc-generalstats-qualimap-mean_coverage	QualiMap_mqc-generalstats-qualimap-median_coverage	QualiMap_mqc-generalstats-qualimap-1_x_pc	QualiMap_mqc-generalstats-qualimap-2_x_pc	QualiMap_mqc-generalstats-qualimap-3_x_pc	QualiMap_mqc-generalstats-qualimap-4_x_pc	QualiMap_mqc-generalstats-qualimap-5_x_pc	QualiMap_mqc-generalstats-qualimap-avg_gc	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed_pct	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed_pct	DamageProfiler_mqc-generalstats-damageprofiler-std	mtnucratio_mqc-generalstats-mtnucratio-nuc_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-nucreads	QualiMap_mqc-generalstats-qualimap-percentage_aligned	QualiMap_mqc-generalstats-qualimap-total_reads	QualiMap_mqc-generalstats-qualimap-general_error_rate	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels	Bcftools Stats_mqc-generalstats-bcftools_stats-tstv	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs
L11_7_SCO_1354_S70																	1528608	105027	105027	6.870761	105027	6.870761	0.988879	0.09885931558935361	0.08823529411764706	0.10980392156862745	0.1625	70.8482207697894	58.0	1168	4.789905892225619	NF	1168.0	4.789	0	10.124078403164898	8.93724150332674	8.259905292813043	7.780375232272373	7.2648804171911525	47.660377358490564	6.87	100.0	32.98331676310634	nan	0	100.0	1168.0	5.779999999999999	134.0	134.0	0.0	1.27	0.0
L11_7_SCO_1354_S70_R1_001	1413161.0	76.0	50.0	93.9442144242588	1528608.0	76.7164322049865	50.0	69.17917843906599	76	27.27272727272727	2655166	90.75002777461309	0.5402781424055716	68.18568209325753	77	27.27272727272727																																						
L11_7_SCO_1354_S70_R2_001	1413161.0	76.0	51.0					68.16130167414599	76	18.181818181818183