Sample	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-total_sequences	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-avg_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_gc	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_duplicates	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-median_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_fails	Adapter Removal_mqc-generalstats-adapter_removal-percent_aligned	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-total_sequences	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-avg_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_gc	Adapter Removal_mqc-generalstats-adapter_removal-aligned_total	Adapter Removal_mqc-generalstats-adapter_removal-percent_collapsed	Adapter Removal_mqc-generalstats-adapter_removal-percent_discarded	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_duplicates	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-median_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_fails	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-flagstat_total	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-flagstat_total	endorSpy_mqc-generalstats-endorspy-endogenous_dna	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed	endorSpy_mqc-generalstats-endorspy-endogenous_dna_post	Picard_mqc-generalstats-picard-PERCENT_DUPLICATION	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-mean_readlength	DamageProfiler_mqc-generalstats-damageprofiler-median	mtnucratio_mqc-generalstats-mtnucratio-mtreads	mtnucratio_mqc-generalstats-mtnucratio-mt_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-mt_nuc_ratio	QualiMap_mqc-generalstats-qualimap-mapped_reads	QualiMap_mqc-generalstats-qualimap-mean_coverage	QualiMap_mqc-generalstats-qualimap-median_coverage	QualiMap_mqc-generalstats-qualimap-1_x_pc	QualiMap_mqc-generalstats-qualimap-2_x_pc	QualiMap_mqc-generalstats-qualimap-3_x_pc	QualiMap_mqc-generalstats-qualimap-4_x_pc	QualiMap_mqc-generalstats-qualimap-5_x_pc	QualiMap_mqc-generalstats-qualimap-avg_gc	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed_pct	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed_pct	DamageProfiler_mqc-generalstats-damageprofiler-std	mtnucratio_mqc-generalstats-mtnucratio-nuc_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-nucreads	QualiMap_mqc-generalstats-qualimap-percentage_aligned	QualiMap_mqc-generalstats-qualimap-total_reads	QualiMap_mqc-generalstats-qualimap-general_error_rate	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels	Bcftools Stats_mqc-generalstats-bcftools_stats-tstv	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs
L2_4_CD2_S74																	940220	858	858	0.091255	858	0.091255	0.911422	0.09523809523809523	0.19047619047619047	0.2222222222222222	0.2777777777777778	62.1044776119403	57.0	76	0.2821297796986614	NF	76.0	0.2823	0	16.993817155891712	6.903175460711927	2.905336454769194	0.9844528483102227	0.3181463473197671	46.96226415094338	0.09	100.0	24.62050879824496	nan	0	100.0	76.0	4.34	38.0	38.0	0.0	18.0	0.0
L2_4_CD2_S74_R1_001	917078.0	76.0	62.0	77.01592768247707	76	18.181818181818183	92.81795005441195	940220.0	69.90854906298526	65.0	1702426	83.18016570019125	7.148192411114431	78.79248096088541	72	18.181818181818183																																						
L2_4_CD2_S74_R2_001	917078.0	76.0	63.0	75.92150664616108	76	27.27272727272727