Sample	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-total_sequences	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-avg_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_gc	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_duplicates	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-median_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_fails	Adapter Removal_mqc-generalstats-adapter_removal-percent_aligned	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-total_sequences	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-avg_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_gc	Adapter Removal_mqc-generalstats-adapter_removal-aligned_total	Adapter Removal_mqc-generalstats-adapter_removal-percent_collapsed	Adapter Removal_mqc-generalstats-adapter_removal-percent_discarded	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_duplicates	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-median_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_fails	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-flagstat_total	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-flagstat_total	endorSpy_mqc-generalstats-endorspy-endogenous_dna	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed	endorSpy_mqc-generalstats-endorspy-endogenous_dna_post	Picard_mqc-generalstats-picard-PERCENT_DUPLICATION	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-mean_readlength	DamageProfiler_mqc-generalstats-damageprofiler-median	mtnucratio_mqc-generalstats-mtnucratio-mtreads	mtnucratio_mqc-generalstats-mtnucratio-mt_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-mt_nuc_ratio	QualiMap_mqc-generalstats-qualimap-mapped_reads	QualiMap_mqc-generalstats-qualimap-mean_coverage	QualiMap_mqc-generalstats-qualimap-median_coverage	QualiMap_mqc-generalstats-qualimap-1_x_pc	QualiMap_mqc-generalstats-qualimap-2_x_pc	QualiMap_mqc-generalstats-qualimap-3_x_pc	QualiMap_mqc-generalstats-qualimap-4_x_pc	QualiMap_mqc-generalstats-qualimap-5_x_pc	QualiMap_mqc-generalstats-qualimap-avg_gc	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed_pct	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed_pct	DamageProfiler_mqc-generalstats-damageprofiler-std	mtnucratio_mqc-generalstats-mtnucratio-nuc_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-nucreads	QualiMap_mqc-generalstats-qualimap-percentage_aligned	QualiMap_mqc-generalstats-qualimap-total_reads	QualiMap_mqc-generalstats-qualimap-general_error_rate	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels	Bcftools Stats_mqc-generalstats-bcftools_stats-tstv	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs
L0_4_EG9_S84																	82647	15953	15953	19.302576	15953	19.302576	0.927161	0.4626334519572954	0.21923076923076923	0.38596491228070173	0.25384615384615383	52.67908745247159	46.0	1162	3.505493186047908	NF	1162.0	3.5054	2	74.35312481239119	60.47907786516179	47.991835264453385	39.2507654439575	32.1246322867263	46.036764705882334	19.3	100.0	21.23336621620183	nan	0	100.0	1162.0	3.0700000000000003	244.0	244.0	0.0	5.78	0.0
L0_4_EG9_S84_R1_001	77360.0	76.0	56.0	56.125904860392964	76	18.181818181818183	83.57807652533609	82647.0	62.314736167072006	62.0	129312	70.35031023784902	11.40770423991727	57.052282599489395	62	45.45454545454545																																						
L0_4_EG9_S84_R2_001	77360.0	76.0	60.0	56.44260599793175	76	45.45454545454545