Sample	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-total_sequences	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-avg_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_gc	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_duplicates	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-median_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_fails	Adapter Removal_mqc-generalstats-adapter_removal-percent_aligned	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-total_sequences	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-avg_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_gc	Adapter Removal_mqc-generalstats-adapter_removal-aligned_total	Adapter Removal_mqc-generalstats-adapter_removal-percent_collapsed	Adapter Removal_mqc-generalstats-adapter_removal-percent_discarded	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_duplicates	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-median_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_fails	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-flagstat_total	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-flagstat_total	endorSpy_mqc-generalstats-endorspy-endogenous_dna	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed	endorSpy_mqc-generalstats-endorspy-endogenous_dna_post	Picard_mqc-generalstats-picard-PERCENT_DUPLICATION	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-mean_readlength	DamageProfiler_mqc-generalstats-damageprofiler-median	mtnucratio_mqc-generalstats-mtnucratio-mtreads	mtnucratio_mqc-generalstats-mtnucratio-mt_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-mt_nuc_ratio	QualiMap_mqc-generalstats-qualimap-mapped_reads	QualiMap_mqc-generalstats-qualimap-mean_coverage	QualiMap_mqc-generalstats-qualimap-median_coverage	QualiMap_mqc-generalstats-qualimap-1_x_pc	QualiMap_mqc-generalstats-qualimap-2_x_pc	QualiMap_mqc-generalstats-qualimap-3_x_pc	QualiMap_mqc-generalstats-qualimap-4_x_pc	QualiMap_mqc-generalstats-qualimap-5_x_pc	QualiMap_mqc-generalstats-qualimap-avg_gc	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed_pct	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed_pct	DamageProfiler_mqc-generalstats-damageprofiler-std	mtnucratio_mqc-generalstats-mtnucratio-nuc_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-nucreads	QualiMap_mqc-generalstats-qualimap-percentage_aligned	QualiMap_mqc-generalstats-qualimap-total_reads	QualiMap_mqc-generalstats-qualimap-general_error_rate	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels	Bcftools Stats_mqc-generalstats-bcftools_stats-tstv	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs
L2_4_CD2_S74_NC_018341																	940220	965	965	0.102636	965	0.102636	0.920207	0.15	0.11764705882352941	0.23809523809523808	0.2727272727272727	63.14285714285714	59.0	77	0.28463640684410646	NF	77.0	0.2845	0	17.84101711026616	6.3331749049429655	2.8754752851711025	0.9743346007604563	0.3148764258555133	46.49090909090909	0.1	100.0	25.437130715700203	nan	0	100.0	77.0	3.9899999999999998	28.0	28.0	0.0	13.0	0.0
L2_4_CD2_S74_NC_018341_R1_001	917078.0	76.0	62.0	77.01592768247707	76	18.181818181818183	92.81795005441195	940220.0	69.90854906298526	65.0	1702426	83.18016570019125	7.148192411114431	78.7708428891275	72	18.181818181818183																																						
L2_4_CD2_S74_NC_018341_R2_001	917078.0	76.0	63.0	75.92150664616108	76	27.27272727272727