nf-core/eager v2.4.7
Run Name: desperate_lavoisier
nf-core/eager execution completed successfully!
The workflow was completed at 2024-07-26T12:39:01.040+02:00 (duration: 2m 25s)
The command used to launch the workflow was as follows:
nextflow run nf-core/eager --input '/work/project/crucial/Sarah/7-EAGER/NC_018341.1/*_R{1,2}*.fastq.gz' --fasta /work/project/crucial/Sarah/Ref/NC_018341.1.fasta -c /work/project/crucial/Sarah/7-EAGER/crucial_nextflow.config --run_mtnucratio --mtnucratio_header NC_018341.1 --mapper circularmapper --circulartarget /work/project/crucial/Sarah/Ref/NC_018341.1.fasta --run_bam_filtering --bam_filter_minreadlength 30 --run_genotyping --genotyping_tool ug --genotyping_source raw --run_vcf2genome --vcf2genome_outfile out_NC_018341 --vcf2genome_header NC_018341 -resume
Pipeline Configuration:
| Pipeline Release | master |
|---|---|
| Run Name | desperate_lavoisier |
| Input | /work/project/crucial/Sarah/7-EAGER/NC_018341.1/*_R{1,2}*.fastq.gz |
| Fasta Ref | /work/project/crucial/Sarah/Ref/NC_018341.1.fasta |
| Max Resources | 120 GB memory, 48 cpus, 4d time per job |
| Container | singularity - nfcore/eager:2.4.7 |
| Output dir | ./results |
| Launch dir | /work/project/crucial/Sarah/7-EAGER/NC_018341.1_RESULTS |
| Working dir | /work/project/crucial/Sarah/7-EAGER/NC_018341.1_RESULTS/work |
| Script dir | /home/smaman/.nextflow/assets/nf-core/eager |
| User | smaman |
| Config Profile | standard |
| Config Profile Description | The Genotoul cluster profile |
| Config Profile Contact | support.bioinfo.genotoul@inrae.fr |
| Config Profile URL | https://bioinfo.genotoul.fr/ |
| Config Files | /home/smaman/.nextflow/assets/nf-core/eager/nextflow.config, /work/project/crucial/Sarah/7-EAGER/crucial_nextflow.config |
| Date Started | 2024-07-26T12:36:35.975+02:00 |
| Date Completed | 2024-07-26T12:39:01.040+02:00 |
| Pipeline script file path | /home/smaman/.nextflow/assets/nf-core/eager/main.nf |
| Pipeline script hash ID | 9468fc0cc9c5c58adcaf963a03e35970 |
| Pipeline repository Git URL | https://github.com/nf-core/eager |
| Pipeline repository Git Commit | 631f18efa4147d0b787245ed8dda041d00ebf6fd |
| Pipeline Git branch/tag | master |
| Nextflow Version | 21.10.6 |
| Nextflow Build | 5660 |
| Nextflow Compile Timestamp | 21-12-2021 16:55 UTC |
nf-core/eager