Sample	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-total_sequences	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-avg_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_gc	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_duplicates	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-median_sequence_length	FastQC (pre-Trimming)_mqc-generalstats-fastqc_pre_trimming-percent_fails	Adapter Removal_mqc-generalstats-adapter_removal-percent_aligned	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-total_sequences	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-avg_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_gc	Adapter Removal_mqc-generalstats-adapter_removal-aligned_total	Adapter Removal_mqc-generalstats-adapter_removal-percent_collapsed	Adapter Removal_mqc-generalstats-adapter_removal-percent_discarded	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_duplicates	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-median_sequence_length	FastQC (post-Trimming)_mqc-generalstats-fastqc_post_trimming-percent_fails	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-flagstat_total	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-flagstat_total	endorSpy_mqc-generalstats-endorspy-endogenous_dna	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed	endorSpy_mqc-generalstats-endorspy-endogenous_dna_post	Picard_mqc-generalstats-picard-PERCENT_DUPLICATION	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-5_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime1	DamageProfiler_mqc-generalstats-damageprofiler-3_Prime2	DamageProfiler_mqc-generalstats-damageprofiler-mean_readlength	DamageProfiler_mqc-generalstats-damageprofiler-median	mtnucratio_mqc-generalstats-mtnucratio-mtreads	mtnucratio_mqc-generalstats-mtnucratio-mt_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-mt_nuc_ratio	QualiMap_mqc-generalstats-qualimap-mapped_reads	QualiMap_mqc-generalstats-qualimap-mean_coverage	QualiMap_mqc-generalstats-qualimap-median_coverage	QualiMap_mqc-generalstats-qualimap-1_x_pc	QualiMap_mqc-generalstats-qualimap-2_x_pc	QualiMap_mqc-generalstats-qualimap-3_x_pc	QualiMap_mqc-generalstats-qualimap-4_x_pc	QualiMap_mqc-generalstats-qualimap-5_x_pc	QualiMap_mqc-generalstats-qualimap-avg_gc	Samtools Flagstat (pre-samtools filter)_mqc-generalstats-samtools_flagstat_pre_samtools_filter-mapped_passed_pct	Samtools Flagstat (post-samtools filter)_mqc-generalstats-samtools_flagstat_post_samtools_filter-mapped_passed_pct	DamageProfiler_mqc-generalstats-damageprofiler-std	mtnucratio_mqc-generalstats-mtnucratio-nuc_cov_avg	mtnucratio_mqc-generalstats-mtnucratio-nucreads	QualiMap_mqc-generalstats-qualimap-percentage_aligned	QualiMap_mqc-generalstats-qualimap-total_reads	QualiMap_mqc-generalstats-qualimap-general_error_rate	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels	Bcftools Stats_mqc-generalstats-bcftools_stats-tstv	Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs
L0_5_EG10_S85																	152418	29096	29096	19.089609	29096	19.089609	0.843587	0.4261682242990654	0.29244357212953875	0.4090909090909091	0.2645739910313901	55.735702270815274	50.0	4551	14.833910654562828	NF	4551.0	14.8355	12	93.31103678929766	88.60487338748209	84.83635929288103	81.16340181557572	76.33779264214047	47.53508771929824	19.09	100.0	20.742306431029906	nan	0	100.0	4551.0	2.31	237.0	237.0	0.0	12.17	0.0
L0_5_EG10_S85_R1_001	150426.0	76.0	55.0	67.30817810750801	76	18.181818181818183	88.03464826559238	152418.0	60.102389481557296	61.0	264854	74.96908779067448	11.85333652427107	66.31631434607462	57	36.36363636363637																																						
L0_5_EG10_S85_R2_001	150426.0	76.0	60.0	65.42220094930397	76	45.45454545454545																																																
L7_14_22d_S48																	2004365	801836	801836	40.00449	801836	40.00449	0.964943	0.2157006603081438	0.18827206429528204	0.22646850672328378	0.18754745634016703	87.28153455212717	85.0	28110	146.55297419971333	NF	28110.0	146.565	159	99.91041567128524	99.86860965121835	99.85666507405638	99.8148590539895	99.7730530339226	46.99472494348153	40.0	100.0	24.18467197967772	nan	0	100.0	28110.0	2.54	238.0	238.0	0.0	10.9	0.0
L7_14_22d_S48_R1_001	2005450.0	76.0	48.0	34.69654248397697	76	9.090909090909092	96.88678351492185	2004365.0	61.30390023773115	48.0	3886032	91.70206188137325	4.1760203445610715	34.18174699660469	57	9.090909090909092																																						
L7_14_22d_S48_R2_001	2005450.0	76.0	48.0	34.451006475300645	76	27.27272727272727