Module	Section	Sample Name	Source
FastQC (pre-Trimming)	all_sections	L4_6_MB2_S16_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_6_MB2_S16_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_11_SH2000-99-394-g_S46_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_11_SH2000-99-394-g_S46_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_14_SM2_S24_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_14_SM2_S24_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_1_MB14_S11_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_1_MB14_S11_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_1_MB15_S1_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_1_MB15_S1_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_9_MD6_S34_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L5_9_MD6_S34_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_3_BC7_S60_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_3_BC7_S60_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_3_MB16_S13_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_3_MB16_S13_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_10_MB13_S5_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_10_MB13_S5_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_12_MB6_S7_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_12_MB6_S7_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_3_EG6_S83_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L0_3_EG6_S83_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_4_SH1979-4-6843-c_S42_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_4_SH1979-4-6843-c_S42_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_4_BC8_S61_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_4_BC8_S61_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_1_BC5_S58_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_1_BC5_S58_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_12_MD1_S22_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_12_MD1_S22_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_14_MB10_S9_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_14_MB10_S9_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_15_SH2000-99-390-c_S57_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_15_SH2000-99-390-c_S57_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_5_BC9_S62_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_5_BC9_S62_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_1_SCO_98_S66_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_1_SCO_98_S66_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_10_MB13_S5_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_10_MB13_S5_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_15_MB12_S10_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_15_MB12_S10_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_15_SH2000-99-390-c_S57_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_15_SH2000-99-390-c_S57_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_3_BC7_S60_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_3_BC7_S60_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_3_SCO_114_S68_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_3_SCO_114_S68_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_13_SH2000-99-390-b_S55_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_13_SH2000-99-390-b_S55_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_15_BC10_S25_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_15_BC10_S25_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_2_SCO_81_S67_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_2_SCO_81_S67_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_6_MB2_S16_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_6_MB2_S16_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_10_BC14_S20_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_10_BC14_S20_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_4_BC8_S61_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_4_BC8_S61_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_4_SH1979-4-6843-c_S42_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_4_SH1979-4-6843-c_S42_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_6_SCO_116_S69_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_6_SCO_116_S69_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_11_MB18_S6_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_11_MB18_S6_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_5_BC9_S62_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_5_BC9_S62_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_9_MD6_S34_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L5_9_MD6_S34_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_3_SH1979-4-6843-e_S41_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_3_SH1979-4-6843-e_S41_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_11_SH2000-99-394-g_S46_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_11_SH2000-99-394-g_S46_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_9_MB17_S4_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_9_MB17_S4_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_8_SH2000-99-394-e_S45_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_8_SH2000-99-394-e_S45_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_2_BC6_S59_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_2_BC6_S59_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_6_TP1_S75_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L2_6_TP1_S75_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_13_SH2000-99-390-b_S55_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_13_SH2000-99-390-b_S55_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_13_MB11_S8_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_13_MB11_S8_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_6_MB3_S3_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_6_MB3_S3_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_14_SH1979-4-6843-a_S56_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_14_SH1979-4-6843-a_S56_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_9_MB17_S4_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_9_MB17_S4_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_8_SH2000-99-394-e_S45_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_8_SH2000-99-394-e_S45_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_6_MB3_S3_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_6_MB3_S3_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_8_BC1_S77_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L2_8_BC1_S77_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_11_MD14_S36_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L5_11_MD14_S36_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_3_EG6_S83_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L0_3_EG6_S83_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_7_TP2_S76_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L2_7_TP2_S76_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_5_SM3_S2_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_5_SM3_S2_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_10_MD11_S35_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L5_10_MD11_S35_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_7_TP2_S76_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L2_7_TP2_S76_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_7_SH2000-99-394-c_S54_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_7_SH2000-99-394-c_S54_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_3_SCO_114_S68_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_3_SCO_114_S68_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_15_MB12_S10_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_15_MB12_S10_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_8_BC1_S77_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L2_8_BC1_S77_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_1_EG4_S81_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L0_1_EG4_S81_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_3_MB16_S13_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_3_MB16_S13_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_7_MB1_S17_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_7_MB1_S17_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_1_MB15_S1_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_1_MB15_S1_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_6_SCO_116_S69_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_6_SCO_116_S69_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_10_MD11_S35_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L5_10_MD11_S35_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_5_SM3_S2_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_5_SM3_S2_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_12_MB6_S7_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_12_MB6_S7_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_14_SH1979-4-6843-a_S56_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_14_SH1979-4-6843-a_S56_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_2_MD13_S12_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_2_MD13_S12_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_13_MB11_S8_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_13_MB11_S8_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_13_SH2000-99-394-f_S47_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_13_SH2000-99-394-f_S47_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_12_SCO_2213_S64_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_12_SCO_2213_S64_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_5_SH1979-4-6843-d_S43_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_5_SH1979-4-6843-d_S43_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_2_SCO_81_S67_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_2_SCO_81_S67_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_12_SCO_2213_S64_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_12_SCO_2213_S64_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_13_SH2000-99-394-f_S47_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_13_SH2000-99-394-f_S47_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_7_SH2000-99-394-c_S54_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_7_SH2000-99-394-c_S54_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_2_BC6_S59_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_2_BC6_S59_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L5_11_MD14_S36_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L5_11_MD14_S36_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_15_BC10_S25_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_15_BC10_S25_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_7_MB1_S17_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_7_MB1_S17_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L11_1_SCO_98_S66_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L11_1_SCO_98_S66_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_10_BC14_S20_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_10_BC14_S20_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_14_MB10_S9_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_14_MB10_S9_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_3_SH1979-4-6843-e_S41_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_3_SH1979-4-6843-e_S41_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_12_MD1_S22_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_12_MD1_S22_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L0_1_EG4_S81_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L0_1_EG4_S81_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L2_6_TP1_S75_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L2_6_TP1_S75_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_14_SM2_S24_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_14_SM2_S24_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_6_SH2001-106_11-b_S44_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_6_SH2001-106_11-b_S44_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_6_SH2001-106_11-b_S44_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_6_SH2001-106_11-b_S44_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_1_MB14_S11_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_1_MB14_S11_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_6_SH1979-4-6843-b_S53_R2_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_6_SH1979-4-6843-b_S53_R2_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L10_1_BC5_S58_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L10_1_BC5_S58_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L9_6_SH1979-4-6843-b_S53_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L9_6_SH1979-4-6843-b_S53_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L4_2_MD13_S12_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L4_2_MD13_S12_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L3_11_MB18_S6_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L3_11_MB18_S6_R1_001_raw_fastqc.zip
FastQC (pre-Trimming)	all_sections	L6_5_SH1979-4-6843-d_S43_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc_raw/L6_5_SH1979-4-6843-d_S43_R1_001_raw_fastqc.zip
Adapter Removal	all_sections	L11_3_SCO_114_S68_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L11_3_SCO_114_S68_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_14_MB10_S9_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_14_MB10_S9_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_9_MB17_S4_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_9_MB17_S4_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_11_MB18_S6_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_11_MB18_S6_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_5_BC9_S62_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L10_5_BC9_S62_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_10_MB13_S5_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_10_MB13_S5_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L11_1_SCO_98_S66_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L11_1_SCO_98_S66_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_12_MB6_S7_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_12_MB6_S7_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L11_2_SCO_81_S67_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L11_2_SCO_81_S67_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_13_SH2000-99-390-b_S55_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L9_13_SH2000-99-390-b_S55_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_6_SH2001-106_11-b_S44_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_6_SH2001-106_11-b_S44_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_14_SH1979-4-6843-a_S56_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L9_14_SH1979-4-6843-a_S56_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_7_SH2000-99-394-c_S54_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L9_7_SH2000-99-394-c_S54_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_6_MB2_S16_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_6_MB2_S16_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_14_SM2_S24_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_14_SM2_S24_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_11_SH2000-99-394-g_S46_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_11_SH2000-99-394-g_S46_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_11_MD14_S36_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L5_11_MD14_S36_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_12_SCO_2213_S64_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L10_12_SCO_2213_S64_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_8_BC1_S77_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L2_8_BC1_S77_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_2_BC6_S59_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L10_2_BC6_S59_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_6_MB3_S3_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_6_MB3_S3_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_9_MD6_S34_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L5_9_MD6_S34_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L11_6_SCO_116_S69_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L11_6_SCO_116_S69_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_3_MB16_S13_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_3_MB16_S13_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_7_MB1_S17_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_7_MB1_S17_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_10_BC14_S20_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_10_BC14_S20_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_3_BC7_S60_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L10_3_BC7_S60_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_4_SH1979-4-6843-c_S42_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_4_SH1979-4-6843-c_S42_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_5_SH1979-4-6843-d_S43_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_5_SH1979-4-6843-d_S43_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_13_SH2000-99-394-f_S47_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_13_SH2000-99-394-f_S47_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L0_3_EG6_S83_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L0_3_EG6_S83_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_13_MB11_S8_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_13_MB11_S8_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_1_MB15_S1_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_1_MB15_S1_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_6_TP1_S75_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L2_6_TP1_S75_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L0_1_EG4_S81_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L0_1_EG4_S81_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_2_MD13_S12_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_2_MD13_S12_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_4_BC8_S61_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L10_4_BC8_S61_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_5_SM3_S2_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_5_SM3_S2_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_8_SH2000-99-394-e_S45_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_8_SH2000-99-394-e_S45_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L5_10_MD11_S35_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L5_10_MD11_S35_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_1_MB14_S11_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_1_MB14_S11_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L2_7_TP2_S76_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L2_7_TP2_S76_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L10_1_BC5_S58_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L10_1_BC5_S58_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L6_3_SH1979-4-6843-e_S41_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L6_3_SH1979-4-6843-e_S41_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_15_BC10_S25_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_15_BC10_S25_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L3_15_MB12_S10_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L3_15_MB12_S10_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_6_SH1979-4-6843-b_S53_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L9_6_SH1979-4-6843-b_S53_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L9_15_SH2000-99-390-c_S57_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L9_15_SH2000-99-390-c_S57_R1_001.fastq_L0.pe.settings
Adapter Removal	all_sections	L4_12_MD1_S22_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/adapter_removal/L4_12_MD1_S22_R1_001.fastq_L0.pe.settings
FastQC (post-Trimming)	all_sections	L5_11_MD14_S36_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L5_11_MD14_S36_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L0_3_EG6_S83_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L0_3_EG6_S83_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_10_BC14_S20_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_10_BC14_S20_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_7_TP2_S76_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L2_7_TP2_S76_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L11_6_SCO_116_S69_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L11_6_SCO_116_S69_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_2_MD13_S12_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_2_MD13_S12_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_14_SH1979-4-6843-a_S56_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L9_14_SH1979-4-6843-a_S56_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_12_SCO_2213_S64_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L10_12_SCO_2213_S64_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_6_MB3_S3_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_6_MB3_S3_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_11_SH2000-99-394-g_S46_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_11_SH2000-99-394-g_S46_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_8_BC1_S77_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L2_8_BC1_S77_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_2_BC6_S59_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L10_2_BC6_S59_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_10_MB13_S5_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_10_MB13_S5_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_3_MB16_S13_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_3_MB16_S13_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_3_SH1979-4-6843-e_S41_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_3_SH1979-4-6843-e_S41_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_4_BC8_S61_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L10_4_BC8_S61_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_6_SH2001-106_11-b_S44_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_6_SH2001-106_11-b_S44_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_4_SH1979-4-6843-c_S42_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_4_SH1979-4-6843-c_S42_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_11_MB18_S6_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_11_MB18_S6_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_13_MB11_S8_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_13_MB11_S8_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_12_MD1_S22_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_12_MD1_S22_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_1_BC5_S58_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L10_1_BC5_S58_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L0_1_EG4_S81_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L0_1_EG4_S81_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L11_3_SCO_114_S68_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L11_3_SCO_114_S68_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_8_SH2000-99-394-e_S45_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_8_SH2000-99-394-e_S45_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_9_MD6_S34_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L5_9_MD6_S34_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_15_MB12_S10_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_15_MB12_S10_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_14_MB10_S9_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_14_MB10_S9_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_6_MB2_S16_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_6_MB2_S16_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_1_MB14_S11_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_1_MB14_S11_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_13_SH2000-99-394-f_S47_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_13_SH2000-99-394-f_S47_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_9_MB17_S4_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_9_MB17_S4_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_6_SH1979-4-6843-b_S53_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L9_6_SH1979-4-6843-b_S53_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_5_SM3_S2_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_5_SM3_S2_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_13_SH2000-99-390-b_S55_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L9_13_SH2000-99-390-b_S55_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L11_1_SCO_98_S66_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L11_1_SCO_98_S66_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_7_SH2000-99-394-c_S54_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L9_7_SH2000-99-394-c_S54_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_15_BC10_S25_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_15_BC10_S25_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_14_SM2_S24_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_14_SM2_S24_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_3_BC7_S60_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L10_3_BC7_S60_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L5_10_MD11_S35_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L5_10_MD11_S35_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L2_6_TP1_S75_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L2_6_TP1_S75_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L9_15_SH2000-99-390-c_S57_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L9_15_SH2000-99-390-c_S57_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L6_5_SH1979-4-6843-d_S43_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L6_5_SH1979-4-6843-d_S43_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_12_MB6_S7_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_12_MB6_S7_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L4_7_MB1_S17_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L4_7_MB1_S17_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L10_5_BC9_S62_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L10_5_BC9_S62_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L3_1_MB15_S1_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L3_1_MB15_S1_R1_001.fastq_L0.pe.combined_fastqc.zip
FastQC (post-Trimming)	all_sections	L11_2_SCO_81_S67_R1_001	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/fastqc/L11_2_SCO_81_S67_R1_001.fastq_L0.pe.combined_fastqc.zip
Samtools Flagstat (pre-samtools filter)	flagstat	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L10_2_BC6_S59_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L10_4_BC8_S61_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L9_14_SH1979-4-6843-a_S56_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_2_MD13_S12_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_13_MB11_S8_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L5_11_MD14_S36_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_5_SH1979-4-6843-d_S43_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L11_2_SCO_81_S67_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_6_MB2_S16_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L11_3_SCO_114_S68_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_12_MB6_S7_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_13_SH2000-99-394-f_S47_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L2_8_BC1_S77_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L0_1_EG4_S81_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_12_MD1_S22_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_11_SH2000-99-394-g_S46_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_6_SH2001-106_11-b_S44_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L10_1_BC5_S58_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L9_7_SH2000-99-394-c_S54_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_15_BC10_S25_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L10_12_SCO_2213_S64_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_10_BC14_S20_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L5_10_MD11_S35_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_1_MB14_S11_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_8_SH2000-99-394-e_S45_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L5_9_MD6_S34_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_15_MB12_S10_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_7_MB1_S17_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L9_6_SH1979-4-6843-b_S53_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L10_5_BC9_S62_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_14_MB10_S9_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_10_MB13_S5_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_14_SM2_S24_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_5_SM3_S2_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L9_13_SH2000-99-390-b_S55_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_4_SH1979-4-6843-c_S42_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L0_3_EG6_S83_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L2_7_TP2_S76_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L2_6_TP1_S75_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L9_15_SH2000-99-390-c_S57_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_9_MB17_S4_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L4_3_MB16_S13_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L10_3_BC7_S60_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L6_3_SH1979-4-6843-e_S41_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_6_MB3_S3_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L11_1_SCO_98_S66_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L11_6_SCO_116_S69_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_1_MB15_S1_flagstat.stats
Samtools Flagstat (pre-samtools filter)	flagstat	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat/L3_11_MB18_S6_flagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_10_MB13_S5_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_11_SH2000-99-394-g_S46_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_3_SH1979-4-6843-e_S41_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L10_1_BC5_S58_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_5_SH1979-4-6843-d_S43_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L2_6_TP1_S75_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_14_SM2_S24_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L10_12_SCO_2213_S64_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_14_MB10_S9_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_6_MB3_S3_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L9_13_SH2000-99-390-b_S55_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_15_BC10_S25_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L2_8_BC1_S77_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L5_9_MD6_S34_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_6_SH2001-106_11-b_S44_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L0_1_EG4_S81_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_10_BC14_S20_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L11_3_SCO_114_S68_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L11_1_SCO_98_S66_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L10_2_BC6_S59_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_13_SH2000-99-394-f_S47_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_3_MB16_S13_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_4_SH1979-4-6843-c_S42_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_15_MB12_S10_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L2_7_TP2_S76_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L0_3_EG6_S83_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_11_MB18_S6_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L10_4_BC8_S61_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L11_6_SCO_116_S69_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_6_MB2_S16_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L9_7_SH2000-99-394-c_S54_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L9_14_SH1979-4-6843-a_S56_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L9_15_SH2000-99-390-c_S57_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_2_MD13_S12_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L5_10_MD11_S35_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_1_MB14_S11_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L11_2_SCO_81_S67_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_7_MB1_S17_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L6_8_SH2000-99-394-e_S45_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_5_SM3_S2_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_13_MB11_S8_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_12_MB6_S7_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L10_3_BC7_S60_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L9_6_SH1979-4-6843-b_S53_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L10_5_BC9_S62_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L5_11_MD14_S36_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L4_12_MD1_S22_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_9_MB17_S4_postfilterflagstat.stats
Samtools Flagstat (post-samtools filter)	flagstat	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/flagstat_filtered/L3_1_MB15_S1_postfilterflagstat.stats
Picard	DuplicationMetrics	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_6_MB3_S3_rmdup.metrics
Picard	DuplicationMetrics	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_10_MB13_S5_rmdup.metrics
Picard	DuplicationMetrics	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L11_1_SCO_98_S66_rmdup.metrics
Picard	DuplicationMetrics	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L11_6_SCO_116_S69_rmdup.metrics
Picard	DuplicationMetrics	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L5_10_MD11_S35_rmdup.metrics
Picard	DuplicationMetrics	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_5_SH1979-4-6843-d_S43_rmdup.metrics
Picard	DuplicationMetrics	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_2_MD13_S12_rmdup.metrics
Picard	DuplicationMetrics	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_12_MB6_S7_rmdup.metrics
Picard	DuplicationMetrics	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_3_MB16_S13_rmdup.metrics
Picard	DuplicationMetrics	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_14_SM2_S24_rmdup.metrics
Picard	DuplicationMetrics	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L11_2_SCO_81_S67_rmdup.metrics
Picard	DuplicationMetrics	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L10_5_BC9_S62_rmdup.metrics
Picard	DuplicationMetrics	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L9_7_SH2000-99-394-c_S54_rmdup.metrics
Picard	DuplicationMetrics	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L10_1_BC5_S58_rmdup.metrics
Picard	DuplicationMetrics	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_8_SH2000-99-394-e_S45_rmdup.metrics
Picard	DuplicationMetrics	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L10_3_BC7_S60_rmdup.metrics
Picard	DuplicationMetrics	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_4_SH1979-4-6843-c_S42_rmdup.metrics
Picard	DuplicationMetrics	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L2_8_BC1_S77_rmdup.metrics
Picard	DuplicationMetrics	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_15_BC10_S25_rmdup.metrics
Picard	DuplicationMetrics	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L2_7_TP2_S76_rmdup.metrics
Picard	DuplicationMetrics	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L2_6_TP1_S75_rmdup.metrics
Picard	DuplicationMetrics	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_5_SM3_S2_rmdup.metrics
Picard	DuplicationMetrics	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_14_MB10_S9_rmdup.metrics
Picard	DuplicationMetrics	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_13_SH2000-99-394-f_S47_rmdup.metrics
Picard	DuplicationMetrics	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_3_SH1979-4-6843-e_S41_rmdup.metrics
Picard	DuplicationMetrics	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L5_9_MD6_S34_rmdup.metrics
Picard	DuplicationMetrics	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L9_15_SH2000-99-390-c_S57_rmdup.metrics
Picard	DuplicationMetrics	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L9_14_SH1979-4-6843-a_S56_rmdup.metrics
Picard	DuplicationMetrics	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L11_3_SCO_114_S68_rmdup.metrics
Picard	DuplicationMetrics	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_12_MD1_S22_rmdup.metrics
Picard	DuplicationMetrics	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_1_MB15_S1_rmdup.metrics
Picard	DuplicationMetrics	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_1_MB14_S11_rmdup.metrics
Picard	DuplicationMetrics	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_7_MB1_S17_rmdup.metrics
Picard	DuplicationMetrics	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_13_MB11_S8_rmdup.metrics
Picard	DuplicationMetrics	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L0_3_EG6_S83_rmdup.metrics
Picard	DuplicationMetrics	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_6_SH2001-106_11-b_S44_rmdup.metrics
Picard	DuplicationMetrics	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L5_11_MD14_S36_rmdup.metrics
Picard	DuplicationMetrics	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L9_6_SH1979-4-6843-b_S53_rmdup.metrics
Picard	DuplicationMetrics	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L10_2_BC6_S59_rmdup.metrics
Picard	DuplicationMetrics	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L9_13_SH2000-99-390-b_S55_rmdup.metrics
Picard	DuplicationMetrics	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_11_MB18_S6_rmdup.metrics
Picard	DuplicationMetrics	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L0_1_EG4_S81_rmdup.metrics
Picard	DuplicationMetrics	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_9_MB17_S4_rmdup.metrics
Picard	DuplicationMetrics	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_6_MB2_S16_rmdup.metrics
Picard	DuplicationMetrics	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L10_4_BC8_S61_rmdup.metrics
Picard	DuplicationMetrics	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L10_12_SCO_2213_S64_rmdup.metrics
Picard	DuplicationMetrics	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L4_10_BC14_S20_rmdup.metrics
Picard	DuplicationMetrics	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L3_15_MB12_S10_rmdup.metrics
Picard	DuplicationMetrics	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/markdup/L6_11_SH2000-99-394-g_S46_rmdup.metrics
Preseq	all_sections	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L11_2_SCO_81_S67.filtered.preseq
Preseq	all_sections	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_13_MB11_S8.filtered.preseq
Preseq	all_sections	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L5_10_MD11_S35.filtered.preseq
Preseq	all_sections	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_14_SM2_S24.filtered.preseq
Preseq	all_sections	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_10_BC14_S20.filtered.preseq
Preseq	all_sections	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L0_3_EG6_S83.filtered.preseq
Preseq	all_sections	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_11_SH2000-99-394-g_S46.filtered.preseq
Preseq	all_sections	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L10_3_BC7_S60.filtered.preseq
Preseq	all_sections	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L10_2_BC6_S59.filtered.preseq
Preseq	all_sections	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_2_MD13_S12.filtered.preseq
Preseq	all_sections	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L9_6_SH1979-4-6843-b_S53.filtered.preseq
Preseq	all_sections	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_7_MB1_S17.filtered.preseq
Preseq	all_sections	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L11_3_SCO_114_S68.filtered.preseq
Preseq	all_sections	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L10_12_SCO_2213_S64.filtered.preseq
Preseq	all_sections	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L10_5_BC9_S62.filtered.preseq
Preseq	all_sections	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_1_MB14_S11.filtered.preseq
Preseq	all_sections	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_8_SH2000-99-394-e_S45.filtered.preseq
Preseq	all_sections	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L11_6_SCO_116_S69.filtered.preseq
Preseq	all_sections	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L10_4_BC8_S61.filtered.preseq
Preseq	all_sections	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_3_MB16_S13.filtered.preseq
Preseq	all_sections	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L5_9_MD6_S34.filtered.preseq
Preseq	all_sections	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L9_13_SH2000-99-390-b_S55.filtered.preseq
Preseq	all_sections	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_14_MB10_S9.filtered.preseq
Preseq	all_sections	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L11_1_SCO_98_S66.filtered.preseq
Preseq	all_sections	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_4_SH1979-4-6843-c_S42.filtered.preseq
Preseq	all_sections	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_1_MB15_S1.filtered.preseq
Preseq	all_sections	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_13_SH2000-99-394-f_S47.filtered.preseq
Preseq	all_sections	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L9_14_SH1979-4-6843-a_S56.filtered.preseq
Preseq	all_sections	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_6_MB2_S16.filtered.preseq
Preseq	all_sections	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L9_15_SH2000-99-390-c_S57.filtered.preseq
Preseq	all_sections	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_11_MB18_S6.filtered.preseq
Preseq	all_sections	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L10_1_BC5_S58.filtered.preseq
Preseq	all_sections	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_3_SH1979-4-6843-e_S41.filtered.preseq
Preseq	all_sections	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L2_7_TP2_S76.filtered.preseq
Preseq	all_sections	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_12_MB6_S7.filtered.preseq
Preseq	all_sections	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_6_SH2001-106_11-b_S44.filtered.preseq
Preseq	all_sections	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L2_6_TP1_S75.filtered.preseq
Preseq	all_sections	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_12_MD1_S22.filtered.preseq
Preseq	all_sections	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L9_7_SH2000-99-394-c_S54.filtered.preseq
Preseq	all_sections	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L2_8_BC1_S77.filtered.preseq
Preseq	all_sections	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_15_MB12_S10.filtered.preseq
Preseq	all_sections	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_5_SM3_S2.filtered.preseq
Preseq	all_sections	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_10_MB13_S5.filtered.preseq
Preseq	all_sections	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L6_5_SH1979-4-6843-d_S43.filtered.preseq
Preseq	all_sections	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L0_1_EG4_S81.filtered.preseq
Preseq	all_sections	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_6_MB3_S3.filtered.preseq
Preseq	all_sections	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L5_11_MD14_S36.filtered.preseq
Preseq	all_sections	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L3_9_MB17_S4.filtered.preseq
Preseq	all_sections	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/preseq/L4_15_BC10_S25.filtered.preseq
DamageProfiler	all_sections	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof368/dmgprof.json
DamageProfiler	all_sections	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof120/dmgprof.json
DamageProfiler	all_sections	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof392/dmgprof.json
DamageProfiler	all_sections	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof32/dmgprof.json
DamageProfiler	all_sections	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof336/dmgprof.json
DamageProfiler	all_sections	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof264/dmgprof.json
DamageProfiler	all_sections	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof256/dmgprof.json
DamageProfiler	all_sections	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof320/dmgprof.json
DamageProfiler	all_sections	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof8/dmgprof.json
DamageProfiler	all_sections	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof128/dmgprof.json
DamageProfiler	all_sections	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof24/dmgprof.json
DamageProfiler	all_sections	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof296/dmgprof.json
DamageProfiler	all_sections	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof280/dmgprof.json
DamageProfiler	all_sections	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof208/dmgprof.json
DamageProfiler	all_sections	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof232/dmgprof.json
DamageProfiler	all_sections	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof160/dmgprof.json
DamageProfiler	all_sections	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof112/dmgprof.json
DamageProfiler	all_sections	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof136/dmgprof.json
DamageProfiler	all_sections	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof216/dmgprof.json
DamageProfiler	all_sections	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof360/dmgprof.json
DamageProfiler	all_sections	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof104/dmgprof.json
DamageProfiler	all_sections	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof48/dmgprof.json
DamageProfiler	all_sections	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof184/dmgprof.json
DamageProfiler	all_sections	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof384/dmgprof.json
DamageProfiler	all_sections	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof352/dmgprof.json
DamageProfiler	all_sections	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof304/dmgprof.json
DamageProfiler	all_sections	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof40/dmgprof.json
DamageProfiler	all_sections	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof144/dmgprof.json
DamageProfiler	all_sections	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof248/dmgprof.json
DamageProfiler	all_sections	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof240/dmgprof.json
DamageProfiler	all_sections	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof64/dmgprof.json
DamageProfiler	all_sections	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof88/dmgprof.json
DamageProfiler	all_sections	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof312/dmgprof.json
DamageProfiler	all_sections	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof96/dmgprof.json
DamageProfiler	all_sections	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof288/dmgprof.json
DamageProfiler	all_sections	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof80/dmgprof.json
DamageProfiler	all_sections	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof344/dmgprof.json
DamageProfiler	all_sections	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof200/dmgprof.json
DamageProfiler	all_sections	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof16/dmgprof.json
DamageProfiler	all_sections	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof328/dmgprof.json
DamageProfiler	all_sections	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof176/dmgprof.json
DamageProfiler	all_sections	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof376/dmgprof.json
DamageProfiler	all_sections	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof192/dmgprof.json
DamageProfiler	all_sections	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof152/dmgprof.json
DamageProfiler	all_sections	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof224/dmgprof.json
DamageProfiler	all_sections	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof272/dmgprof.json
DamageProfiler	all_sections	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof72/dmgprof.json
DamageProfiler	all_sections	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof168/dmgprof.json
DamageProfiler	all_sections	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/damageprofiler/dmgprof56/dmgprof.json
mtnucratio	all_sections	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_6_MB2_S16_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L11_6_SCO_116_S69_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L10_2_BC6_S59_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_10_BC14_S20_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_4_SH1979-4-6843-c_S42_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L0_3_EG6_S83_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_3_SH1979-4-6843-e_S41_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L11_3_SCO_114_S68_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L9_13_SH2000-99-390-b_S55_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L5_9_MD6_S34_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_6_SH2001-106_11-b_S44_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_9_MB17_S4_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L9_6_SH1979-4-6843-b_S53_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_12_MB6_S7_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_8_SH2000-99-394-e_S45_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L2_6_TP1_S75_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L0_1_EG4_S81_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L11_2_SCO_81_S67_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L10_3_BC7_S60_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L10_5_BC9_S62_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_11_SH2000-99-394-g_S46_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_12_MD1_S22_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_7_MB1_S17_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L10_12_SCO_2213_S64_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_3_MB16_S13_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L2_7_TP2_S76_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_1_MB15_S1_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L9_7_SH2000-99-394-c_S54_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_10_MB13_S5_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_2_MD13_S12_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_13_SH2000-99-394-f_S47_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L10_1_BC5_S58_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L5_10_MD11_S35_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_15_BC10_S25_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L9_15_SH2000-99-390-c_S57_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_6_MB3_S3_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L9_14_SH1979-4-6843-a_S56_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_11_MB18_S6_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L11_1_SCO_98_S66_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_13_MB11_S8_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_5_SM3_S2_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L2_8_BC1_S77_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L5_11_MD14_S36_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_15_MB12_S10_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_1_MB14_S11_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L10_4_BC8_S61_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L4_14_SM2_S24_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L3_14_MB10_S9_rmdup.bam.mtnucratiomtnuc.json
mtnucratio	all_sections	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/mutnucratio/L6_5_SH1979-4-6843-d_S43_rmdup.bam.mtnucratiomtnuc.json
QualiMap	genome_results	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap96/L3_11_MB18_S6_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap360/L2_8_BC1_S77_rmdup_stats/genome_results.txt
QualiMap	genome_results	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap280/L11_6_SCO_116_S69_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap168/L4_1_MB14_S11_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap272/L6_5_SH1979-4-6843-d_S43_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap312/L10_1_BC5_S58_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap320/L4_2_MD13_S12_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap56/L3_13_MB11_S8_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap288/L6_11_SH2000-99-394-g_S46_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap160/L10_5_BC9_S62_rmdup_stats/genome_results.txt
QualiMap	genome_results	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap16/L0_3_EG6_S83_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap144/L6_8_SH2000-99-394-e_S45_rmdup_stats/genome_results.txt
QualiMap	genome_results	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap192/L11_3_SCO_114_S68_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap376/L5_9_MD6_S34_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap216/L6_6_SH2001-106_11-b_S44_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap384/L2_6_TP1_S75_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap40/L10_12_SCO_2213_S64_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap392/L10_4_BC8_S61_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap200/L9_7_SH2000-99-394-c_S54_rmdup_stats/genome_results.txt
QualiMap	genome_results	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap80/L11_2_SCO_81_S67_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap128/L6_4_SH1979-4-6843-c_S42_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap152/L3_12_MB6_S7_rmdup_stats/genome_results.txt
QualiMap	genome_results	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap208/L2_7_TP2_S76_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap296/L3_10_MB13_S5_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap248/L10_2_BC6_S59_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap48/L5_11_MD14_S36_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap104/L4_6_MB2_S16_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap232/L4_7_MB1_S17_rmdup_stats/genome_results.txt
QualiMap	genome_results	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap88/L10_3_BC7_S60_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap184/L3_5_SM3_S2_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap72/L6_13_SH2000-99-394-f_S47_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap224/L4_10_BC14_S20_rmdup_stats/genome_results.txt
QualiMap	genome_results	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap344/L6_3_SH1979-4-6843-e_S41_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap120/L4_14_SM2_S24_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap256/L9_13_SH2000-99-390-b_S55_rmdup_stats/genome_results.txt
QualiMap	genome_results	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap352/L5_10_MD11_S35_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap304/L3_6_MB3_S3_rmdup_stats/genome_results.txt
QualiMap	genome_results	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap328/L11_1_SCO_98_S66_rmdup_stats/genome_results.txt
QualiMap	genome_results	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap8/L0_1_EG4_S81_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap368/L4_15_BC10_S25_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap136/L3_15_MB12_S10_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap264/L3_9_MB17_S4_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap24/L3_1_MB15_S1_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap240/L9_6_SH1979-4-6843-b_S53_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap336/L4_12_MD1_S22_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap32/L9_14_SH1979-4-6843-a_S56_rmdup_stats/genome_results.txt
QualiMap	genome_results	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap64/L4_3_MB16_S13_rmdup_stats/genome_results.txt
QualiMap	genome_results	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap176/L3_14_MB10_S9_rmdup_stats/genome_results.txt
QualiMap	genome_results	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap112/L9_15_SH2000-99-390-c_S57_rmdup_stats/genome_results.txt
QualiMap	coverage_histogram	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap96/L3_11_MB18_S6_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap360/L2_8_BC1_S77_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap280/L11_6_SCO_116_S69_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap168/L4_1_MB14_S11_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap272/L6_5_SH1979-4-6843-d_S43_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap312/L10_1_BC5_S58_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap320/L4_2_MD13_S12_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap56/L3_13_MB11_S8_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap288/L6_11_SH2000-99-394-g_S46_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap160/L10_5_BC9_S62_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap16/L0_3_EG6_S83_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap144/L6_8_SH2000-99-394-e_S45_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap192/L11_3_SCO_114_S68_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap376/L5_9_MD6_S34_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap216/L6_6_SH2001-106_11-b_S44_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap384/L2_6_TP1_S75_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap40/L10_12_SCO_2213_S64_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap392/L10_4_BC8_S61_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap200/L9_7_SH2000-99-394-c_S54_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap80/L11_2_SCO_81_S67_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap128/L6_4_SH1979-4-6843-c_S42_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap152/L3_12_MB6_S7_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap208/L2_7_TP2_S76_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap296/L3_10_MB13_S5_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap248/L10_2_BC6_S59_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap48/L5_11_MD14_S36_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap104/L4_6_MB2_S16_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap232/L4_7_MB1_S17_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap88/L10_3_BC7_S60_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap184/L3_5_SM3_S2_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap72/L6_13_SH2000-99-394-f_S47_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap224/L4_10_BC14_S20_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap344/L6_3_SH1979-4-6843-e_S41_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap120/L4_14_SM2_S24_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap256/L9_13_SH2000-99-390-b_S55_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap352/L5_10_MD11_S35_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap304/L3_6_MB3_S3_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap328/L11_1_SCO_98_S66_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap8/L0_1_EG4_S81_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap368/L4_15_BC10_S25_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap136/L3_15_MB12_S10_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap264/L3_9_MB17_S4_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap24/L3_1_MB15_S1_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap240/L9_6_SH1979-4-6843-b_S53_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap336/L4_12_MD1_S22_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap32/L9_14_SH1979-4-6843-a_S56_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap64/L4_3_MB16_S13_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap176/L3_14_MB10_S9_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap112/L9_15_SH2000-99-390-c_S57_rmdup_stats/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	mapped_gc_distribution	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap96/L3_11_MB18_S6_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap360/L2_8_BC1_S77_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap280/L11_6_SCO_116_S69_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap168/L4_1_MB14_S11_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap272/L6_5_SH1979-4-6843-d_S43_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap312/L10_1_BC5_S58_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap320/L4_2_MD13_S12_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap56/L3_13_MB11_S8_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap288/L6_11_SH2000-99-394-g_S46_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap160/L10_5_BC9_S62_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap16/L0_3_EG6_S83_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap144/L6_8_SH2000-99-394-e_S45_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap192/L11_3_SCO_114_S68_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap376/L5_9_MD6_S34_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap216/L6_6_SH2001-106_11-b_S44_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap384/L2_6_TP1_S75_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap40/L10_12_SCO_2213_S64_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap392/L10_4_BC8_S61_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap200/L9_7_SH2000-99-394-c_S54_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap80/L11_2_SCO_81_S67_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap128/L6_4_SH1979-4-6843-c_S42_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap152/L3_12_MB6_S7_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L2_7_TP2_S76	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap208/L2_7_TP2_S76_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap296/L3_10_MB13_S5_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap248/L10_2_BC6_S59_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap48/L5_11_MD14_S36_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap104/L4_6_MB2_S16_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap232/L4_7_MB1_S17_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap88/L10_3_BC7_S60_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap184/L3_5_SM3_S2_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_13_SH2000-99-394-f_S47	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap72/L6_13_SH2000-99-394-f_S47_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap224/L4_10_BC14_S20_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap344/L6_3_SH1979-4-6843-e_S41_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap120/L4_14_SM2_S24_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap256/L9_13_SH2000-99-390-b_S55_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap352/L5_10_MD11_S35_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap304/L3_6_MB3_S3_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap328/L11_1_SCO_98_S66_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap8/L0_1_EG4_S81_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_15_BC10_S25	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap368/L4_15_BC10_S25_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap136/L3_15_MB12_S10_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap264/L3_9_MB17_S4_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap24/L3_1_MB15_S1_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap240/L9_6_SH1979-4-6843-b_S53_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap336/L4_12_MD1_S22_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap32/L9_14_SH1979-4-6843-a_S56_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap64/L4_3_MB16_S13_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap176/L3_14_MB10_S9_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/qualimap/qualimap112/L9_15_SH2000-99-390-c_S57_rmdup_stats/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
Bcftools	stats	L11_2_SCO_81_S67	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats328
Bcftools	stats	L4_7_MB1_S17	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats336
Bcftools	stats	L0_3_EG6_S83	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats296
Bcftools	stats	L3_11_MB18_S6	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats360
Bcftools	stats	L4_3_MB16_S13	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats304
Bcftools	stats	L9_14_SH1979-4-6843-a_S56	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats16
Bcftools	stats	L3_10_MB13_S5	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats152
Bcftools	stats	L9_15_SH2000-99-390-c_S57	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats24
Bcftools	stats	L11_6_SCO_116_S69	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats144
Bcftools	stats	L4_10_BC14_S20	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats368
Bcftools	stats	L4_12_MD1_S22	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats392
Bcftools	stats	L3_15_MB12_S10	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats376
Bcftools	stats	L10_4_BC8_S61	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats120
Bcftools	stats	L10_3_BC7_S60	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats312
Bcftools	stats	L11_1_SCO_98_S66	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats112
Bcftools	stats	L5_11_MD14_S36	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats344
Bcftools	stats	L10_12_SCO_2213_S64	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats280
Bcftools	stats	L9_6_SH1979-4-6843-b_S53	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats72
Bcftools	stats	L3_5_SM3_S2	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats248
Bcftools	stats	L5_10_MD11_S35	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats232
Bcftools	stats	L5_9_MD6_S34	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats80
Bcftools	stats	L6_4_SH1979-4-6843-c_S42	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats200
Bcftools	stats	L4_2_MD13_S12	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats56
Bcftools	stats	L11_3_SCO_114_S68	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats264
Bcftools	stats	L3_14_MB10_S9	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats136
Bcftools	stats	L4_1_MB14_S11	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats32
Bcftools	stats	L6_5_SH1979-4-6843-d_S43	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats240
Bcftools	stats	L0_1_EG4_S81	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats320
Bcftools	stats	L6_11_SH2000-99-394-g_S46	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats256
Bcftools	stats	L3_6_MB3_S3	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats272
Bcftools	stats	L3_1_MB15_S1	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats176
Bcftools	stats	L6_3_SH1979-4-6843-e_S41	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats128
Bcftools	stats	L4_14_SM2_S24	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats288
Bcftools	stats	L3_9_MB17_S4	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats104
Bcftools	stats	L10_2_BC6_S59	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats64
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Bcftools	stats	L4_6_MB2_S16	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats192
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Bcftools	stats	L2_8_BC1_S77	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats40
Bcftools	stats	L9_13_SH2000-99-390-b_S55	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats168
Bcftools	stats	L9_7_SH2000-99-394-c_S54	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats48
Bcftools	stats	L3_12_MB6_S7	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats208
Bcftools	stats	L6_6_SH2001-106_11-b_S44	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats216
Bcftools	stats	L2_6_TP1_S75	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats96
Bcftools	stats	L3_13_MB11_S8	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats184
Bcftools	stats	L6_8_SH2000-99-394-e_S45	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats8
Bcftools	stats	L10_1_BC5_S58	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats384
Bcftools	stats	L10_5_BC9_S62	/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work/df/382c6ad646541f8ae703c7dc97f9c6/bcftools_stats224