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  nf-core/eager v2.4.7
----------------------------------------------------

Run Name: naughty_heyrovsky

## nf-core/eager execution completed successfully! ##


The workflow was completed at 2024-07-26T14:11:56.035+02:00 (duration: 11m 12s)

The command used to launch the workflow was as follows:

  nextflow run nf-core/eager --input '/work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS/*_R{1,2}*.fastq.gz' --fasta /work/project/crucial/Sarah/Ref/NC_024032.1.fasta -c /work/project/crucial/Sarah/7-EAGER/crucial_nextflow.config --run_mtnucratio --mtnucratio_header NC_024032.1 --mapper circularmapper --circulartarget /work/project/crucial/Sarah/Ref/NC_024032.1.fasta --run_bam_filtering --bam_filter_minreadlength 30 --run_genotyping --genotyping_tool ug --genotyping_source raw --run_vcf2genome --vcf2genome_outfile out_NC_024032 --vcf2genome_header NC_024032 -resume



Pipeline Configuration:
-----------------------
 - Pipeline Release: master
 - Run Name: naughty_heyrovsky
 - Input: /work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS/*_R{1,2}*.fastq.gz
 - Fasta Ref: /work/project/crucial/Sarah/Ref/NC_024032.1.fasta
 - Max Resources: 120 GB memory, 48 cpus, 4d time per job
 - Container: singularity - nfcore/eager:2.4.7
 - Output dir: ./results
 - Launch dir: /work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS
 - Working dir: /work/project/crucial/Sarah/7-EAGER/NC_024032.1_BIS_RESULTS/work
 - Script dir: /home/smaman/.nextflow/assets/nf-core/eager
 - User: smaman
 - Config Profile: standard
 - Config Profile Description: The Genotoul cluster profile
 - Config Profile Contact: support.bioinfo.genotoul@inrae.fr
 - Config Profile URL: https://bioinfo.genotoul.fr/
 - Config Files: /home/smaman/.nextflow/assets/nf-core/eager/nextflow.config, /work/project/crucial/Sarah/7-EAGER/crucial_nextflow.config
 - Date Started: 2024-07-26T14:00:44.429+02:00
 - Date Completed: 2024-07-26T14:11:56.035+02:00
 - Pipeline script file path: /home/smaman/.nextflow/assets/nf-core/eager/main.nf
 - Pipeline script hash ID: 9468fc0cc9c5c58adcaf963a03e35970
 - Pipeline repository Git URL: https://github.com/nf-core/eager
 - Pipeline repository Git Commit: 631f18efa4147d0b787245ed8dda041d00ebf6fd
 - Pipeline Git branch/tag: master
 - Nextflow Version: 21.10.6
 - Nextflow Build: 5660
 - Nextflow Compile Timestamp: 21-12-2021 16:55 UTC

--
nf-core/eager
https://github.com/nf-core/eager